Wall clock time and date at job start Mon Mar 30 2020 02:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31229 * 1 3 3 Si 1.86802 * 120.00458 * 2 1 4 4 H 1.48501 * 109.46854 * 273.11078 * 3 2 1 5 5 H 1.48499 * 109.46866 * 33.10938 * 3 2 1 6 6 H 1.48496 * 109.47423 * 153.10648 * 3 2 1 7 7 C 1.39114 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00365 * 342.56207 * 7 2 1 9 9 N 1.37210 * 119.99896 * 162.83879 * 7 2 1 10 10 C 1.35147 * 126.51570 * 338.44286 * 9 7 2 11 11 N 1.30835 * 109.33420 * 180.02562 * 10 9 7 12 12 C 1.33364 * 109.87736 * 359.97438 * 11 10 9 13 13 C 1.37909 * 107.71222 * 359.73478 * 12 11 10 14 14 C 1.46387 * 126.94621 * 180.27154 * 13 12 11 15 15 O 1.21632 * 120.00298 * 0.17381 * 14 13 12 16 16 O 1.34904 * 119.99819 * 180.17782 * 14 13 12 17 17 H 0.97003 * 119.99918 * 0.02562 * 1 2 3 18 18 H 1.08004 * 125.33357 * 359.97438 * 10 9 7 19 19 H 1.07999 * 126.14252 * 180.02562 * 12 11 10 20 20 H 0.96702 * 116.99857 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2464 1.6177 0.0000 4 1 2.4281 2.0843 -1.3980 5 1 1.4783 2.6327 0.7648 6 1 3.5753 1.4220 0.6333 7 6 2.0078 -1.2048 0.0005 8 1 1.5050 -2.1185 0.2812 9 7 3.3341 -1.2315 -0.3501 10 6 3.9900 -0.3072 -1.0863 11 7 5.2413 -0.6662 -1.2173 12 6 5.4509 -1.8201 -0.5822 13 6 4.2568 -2.2077 -0.0113 14 6 4.0129 -3.4097 0.7878 15 8 4.9213 -4.1876 1.0092 16 8 2.7804 -3.6547 1.2785 17 1 -0.4850 0.8401 -0.0004 18 1 3.5500 0.5871 -1.5022 19 1 6.3885 -2.3526 -0.5216 20 1 2.6678 -4.4612 1.8000 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076578130.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:37 Heat of formation + Delta-G solvation = -36.720351 kcal Electronic energy + Delta-G solvation = -10731.748179 eV Core-core repulsion = 8508.563467 eV Total energy + Delta-G solvation = -2223.184712 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.05181 -38.89322 -35.35379 -34.22115 -31.92392 -29.07475 -25.38038 -23.41765 -21.27406 -19.53078 -18.46826 -17.11956 -16.17148 -15.26279 -15.07351 -14.36161 -13.73725 -13.58338 -13.01203 -12.40761 -12.32777 -11.26191 -11.19899 -10.86021 -10.29760 -10.14800 -9.91930 -9.16241 -8.88466 -7.62184 -7.21755 -4.82264 2.04902 2.79172 2.92374 3.03546 3.55701 3.63025 3.77018 4.15406 4.29423 4.58826 5.53386 5.99248 6.26175 6.43090 6.70747 7.10412 7.21914 7.56825 7.88026 8.29102 8.66850 8.73428 9.06187 9.82275 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.047341 B = 0.019280 C = 0.014465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.316255 B = 1451.969508 C = 1935.298161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.244 1.244 7 C -0.325 4.325 8 H 0.144 0.856 9 N -0.223 5.223 10 C 0.071 3.929 11 N -0.503 5.503 12 C 0.037 3.963 13 C -0.151 4.151 14 C 0.571 3.429 15 O -0.544 6.544 16 O -0.505 6.505 17 H 0.294 0.706 18 H 0.185 0.815 19 H 0.168 0.832 20 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.224 -0.279 1.238 1.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.143 4.143 3 Si 0.714 3.286 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.168 1.168 7 C -0.456 4.456 8 H 0.162 0.838 9 N 0.114 4.886 10 C -0.202 4.202 11 N -0.222 5.222 12 C -0.129 4.129 13 C -0.269 4.269 14 C 0.419 3.581 15 O -0.437 6.437 16 O -0.314 6.314 17 H 0.105 0.895 18 H 0.202 0.798 19 H 0.185 0.815 20 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 1.594 0.491 0.668 1.797 hybrid contribution -0.650 -0.129 0.813 1.049 sum 0.944 0.362 1.481 1.793 Atomic orbital electron populations 1.69590 1.06642 1.30562 1.36069 1.25514 0.95657 0.99988 0.93145 0.86626 0.81233 0.80767 0.79946 1.18517 1.20248 1.16762 1.20104 0.80929 0.99160 1.45378 0.83839 1.41762 1.07784 1.13396 1.25675 1.24189 0.90001 0.99954 1.06102 1.69818 1.15390 1.13415 1.23540 1.22287 0.95773 0.94449 1.00361 1.19915 0.91912 0.97546 1.17548 1.19282 0.79448 0.83498 0.75845 1.90834 1.45033 1.48016 1.59771 1.84864 1.33426 1.47198 1.65922 0.89490 0.79827 0.81475 0.74579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.82 13.95 55.50 0.77 -19.05 14 2 C 0.07 1.82 5.47 -17.48 -0.10 1.72 14 3 Si 0.89 18.85 24.69 -169.99 -4.20 14.65 14 4 H -0.26 -5.19 6.73 56.52 0.38 -4.81 14 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 14 6 H -0.24 -5.48 6.63 56.52 0.37 -5.11 14 7 C -0.32 -8.31 9.99 -14.82 -0.15 -8.46 14 8 H 0.14 3.81 6.41 -52.49 -0.34 3.48 14 9 N -0.22 -5.59 2.76 -59.48 -0.16 -5.75 14 10 C 0.07 1.72 9.58 -90.00 -0.86 0.86 14 11 N -0.50 -12.11 11.19 -13.96 -0.16 -12.26 14 12 C 0.04 0.84 11.72 -17.01 -0.20 0.64 14 13 C -0.15 -3.62 6.91 -81.68 -0.56 -4.18 14 14 C 0.57 12.56 8.29 34.01 0.28 12.85 14 15 O -0.54 -12.27 17.70 -19.37 -0.34 -12.61 14 16 O -0.50 -9.72 11.19 -41.05 -0.46 -10.18 14 17 H 0.29 6.55 8.31 -40.82 -0.34 6.21 14 18 H 0.19 4.15 4.41 -52.48 -0.23 3.92 14 19 H 0.17 3.34 8.06 -52.49 -0.42 2.92 14 20 H 0.40 5.24 9.11 45.56 0.42 5.65 14 LS Contribution 190.20 15.07 2.87 2.87 Total: -1.00 -28.85 190.20 -3.02 -31.87 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 0.24 Total: 7.03 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -1.59 Total: 3.43 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.45 Total: -37.06 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.80 Total: -22.79 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.20 Total: 14.65 kcal Total LS contribution 2.87 Total: 2.87 kcal Total: -28.85 -3.02 -31.87 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076578130.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.849 kcal (2) G-P(sol) polarization free energy of solvation -28.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds