Wall clock time and date at job start Mon Mar 30 2020 02:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31280 * 1 3 3 Si 1.86799 * 120.00088 * 2 1 4 4 H 1.48497 * 109.46961 * 85.62391 * 3 2 1 5 5 H 1.48504 * 109.46937 * 205.62375 * 3 2 1 6 6 H 1.48506 * 109.47170 * 325.62331 * 3 2 1 7 7 C 1.39004 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99768 * 191.33669 * 7 2 1 9 9 N 1.37498 * 120.00097 * 11.34196 * 7 2 1 10 10 C 1.36517 * 126.25953 * 19.92989 * 9 7 2 11 11 N 1.30089 * 108.98204 * 180.02562 * 10 9 7 12 12 C 1.35901 * 109.11907 * 0.02562 * 11 10 9 13 13 C 1.47148 * 126.16218 * 179.97438 * 12 11 10 14 14 O 1.21547 * 119.99856 * 180.02562 * 13 12 11 15 15 O 1.34803 * 119.99886 * 0.02562 * 13 12 11 16 16 C 1.36405 * 126.25273 * 199.62659 * 9 7 2 17 17 H 0.97007 * 119.99737 * 359.97438 * 1 2 3 18 18 H 1.07997 * 125.50700 * 0.02562 * 10 9 7 19 19 H 0.96700 * 117.00265 * 179.97438 * 15 13 12 20 20 H 1.07996 * 126.63268 * 359.96877 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.4018 2.0998 1.3960 5 1 3.5876 1.4151 -0.6055 6 1 1.4936 2.6242 -0.7906 7 6 2.0078 -1.2039 -0.0005 8 1 3.0720 -1.2131 0.1833 9 7 1.3403 -2.3829 -0.2352 10 6 0.1249 -2.5156 -0.8425 11 7 -0.1893 -3.7771 -0.8893 12 6 0.8053 -4.5050 -0.3167 13 6 0.8355 -5.9688 -0.1691 14 8 1.7861 -6.5063 0.3645 15 8 -0.1912 -6.7135 -0.6257 16 6 1.7744 -3.6342 0.0910 17 1 -0.4850 0.8401 0.0004 18 1 -0.4783 -1.7044 -1.2226 19 1 -0.1262 -7.6709 -0.5065 20 1 2.7035 -3.8869 0.5801 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076578134.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:39 Heat of formation + Delta-G solvation = -64.727786 kcal Electronic energy + Delta-G solvation = -10388.700922 eV Core-core repulsion = 8164.301716 eV Total energy + Delta-G solvation = -2224.399206 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.58942 -40.59922 -36.89026 -36.01893 -33.23035 -30.38565 -27.66726 -24.86737 -22.55498 -21.14785 -20.37216 -18.64111 -17.50511 -17.12754 -16.63104 -15.90065 -15.41168 -14.82735 -14.59257 -14.05905 -13.57297 -13.12568 -12.93557 -12.46954 -12.12136 -11.73930 -11.59251 -10.90582 -10.54865 -9.32493 -8.81830 -6.66205 0.59881 1.33440 1.41558 1.58414 1.81049 2.06756 2.31346 2.63341 2.85049 3.01835 3.95736 4.54482 4.77911 4.87161 5.01046 5.26693 5.62744 5.85080 6.20755 6.53808 7.04901 7.25371 7.44572 8.24523 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.106465 B = 0.010684 C = 0.009853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 262.933468 B = 2620.126164 C = 2840.985148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.014 3.986 3 Si 1.025 2.975 4 H -0.264 1.264 5 H -0.253 1.253 6 H -0.267 1.267 7 C -0.383 4.383 8 H 0.129 0.871 9 N -0.265 5.265 10 C 0.149 3.851 11 N -0.499 5.499 12 C -0.121 4.121 13 C 0.586 3.414 14 O -0.558 6.558 15 O -0.502 6.502 16 C -0.040 4.040 17 H 0.296 0.704 18 H 0.206 0.794 19 H 0.426 0.574 20 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.318 -0.007 -0.533 2.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.196 4.196 3 Si 0.843 3.157 4 H -0.188 1.188 5 H -0.176 1.176 6 H -0.191 1.191 7 C -0.511 4.511 8 H 0.146 0.854 9 N 0.073 4.927 10 C -0.132 4.132 11 N -0.220 5.220 12 C -0.251 4.251 13 C 0.433 3.567 14 O -0.451 6.451 15 O -0.314 6.314 16 C -0.189 4.189 17 H 0.106 0.894 18 H 0.223 0.777 19 H 0.286 0.714 20 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.616 0.228 -0.789 1.812 hybrid contribution 0.781 0.281 0.510 0.974 sum 2.397 0.509 -0.279 2.466 Atomic orbital electron populations 1.69869 1.08234 1.31436 1.39760 1.26766 0.96503 1.04239 0.92057 0.84468 0.78270 0.73625 0.79288 1.18839 1.17637 1.19105 1.20674 0.95530 0.81950 1.52925 0.85391 1.42000 1.14072 1.05721 1.30956 1.25254 0.89907 0.94164 1.03884 1.70445 1.27150 1.02939 1.21435 1.19222 0.97226 0.91130 1.17559 1.19246 0.78693 0.85830 0.72915 1.90791 1.36014 1.73733 1.44591 1.84681 1.44949 1.26087 1.75643 1.22605 1.02637 0.84365 1.09274 0.89370 0.77721 0.71397 0.79827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -41.78 10.95 21.66 0.24 -41.54 14 2 C 0.01 0.62 5.37 84.96 0.46 1.08 14 3 Si 1.02 34.45 29.57 68.60 2.03 36.48 14 4 H -0.26 -8.62 7.11 99.48 0.71 -7.91 14 5 H -0.25 -8.13 7.11 99.48 0.71 -7.42 14 6 H -0.27 -8.65 7.11 99.48 0.71 -7.95 14 7 C -0.38 -18.67 10.10 83.99 0.85 -17.82 14 8 H 0.13 5.70 7.86 -2.91 -0.02 5.67 14 9 N -0.26 -13.68 2.90 -352.93 -1.02 -14.71 14 10 C 0.15 7.88 11.20 179.90 2.01 9.89 14 11 N -0.50 -26.29 11.31 -188.36 -2.13 -28.42 14 12 C -0.12 -6.02 7.01 40.45 0.28 -5.74 14 13 C 0.59 25.41 8.33 70.16 0.58 25.99 14 14 O -0.56 -24.83 17.66 19.68 0.35 -24.48 14 15 O -0.50 -17.80 13.44 -57.15 -0.77 -18.57 14 16 C -0.04 -1.95 11.22 83.58 0.94 -1.01 14 17 H 0.30 12.91 8.31 -92.70 -0.77 12.14 14 18 H 0.21 10.72 6.44 -2.91 -0.02 10.70 14 19 H 0.43 9.33 9.11 -74.06 -0.67 8.66 14 20 H 0.18 7.97 8.06 -2.91 -0.02 7.95 14 Total: -1.00 -61.43 200.14 4.43 -57.00 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.61 Total: 21.84 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 5.12 Total: 12.40 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -2.92 Total: -84.67 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -0.42 Total: -43.05 kcal Atomic # 14 Polarization: 34.45 SS G_CDS: 2.03 Total: 36.48 kcal Total: -61.43 4.43 -57.00 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076578134.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.727 kcal (2) G-P(sol) polarization free energy of solvation -61.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds