Wall clock time and date at job start Mon Mar 30 2020 02:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86803 * 119.99851 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00292 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00243 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00042 * 3 2 1 7 7 C 1.38803 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27754 * 7 2 1 10 10 C 1.76201 * 99.99986 * 179.72358 * 9 7 2 11 11 C 1.39713 * 120.54030 * 179.97438 * 10 9 7 12 12 C 1.38141 * 118.31918 * 179.97438 * 11 10 9 13 13 N 1.32564 * 119.19947 * 0.02562 * 12 11 10 14 14 C 1.31810 * 121.02981 * 359.97438 * 13 12 11 15 15 N 1.31724 * 121.84442 * 359.73944 * 14 13 12 16 16 H 0.96996 * 120.00417 * 359.97438 * 1 2 3 17 17 H 1.08001 * 120.84542 * 359.97438 * 11 10 9 18 18 H 1.07998 * 120.39768 * 180.02562 * 12 11 10 19 19 H 1.08000 * 119.07970 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0096 -1.2021 -0.0005 8 1 3.0896 -1.2020 -0.0010 9 16 1.1286 -2.7280 -0.0086 10 6 2.4784 -3.8605 -0.0146 11 6 2.2488 -5.2387 -0.0213 12 6 3.3406 -6.0849 -0.0263 13 7 4.5607 -5.5665 -0.0241 14 6 4.7443 -4.2612 -0.0177 15 7 3.7331 -3.4171 -0.0183 16 1 -0.4850 0.8400 0.0004 17 1 1.2431 -5.6325 -0.0226 18 1 3.2019 -7.1559 -0.0320 19 1 5.7521 -3.8729 -0.0164 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082535431.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:51 Heat of formation + Delta-G solvation = 34.925273 kcal Electronic energy + Delta-G solvation = -8342.552119 eV Core-core repulsion = 6565.227065 eV Total energy + Delta-G solvation = -1777.325054 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 182.021 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.82650 -32.82689 -32.69868 -31.20341 -25.83676 -23.82702 -23.46282 -18.39620 -16.94824 -16.39715 -15.02028 -14.72145 -14.06893 -13.99866 -13.02546 -12.81496 -11.25983 -11.21707 -11.05228 -10.47577 -10.25438 -10.14107 -9.38977 -9.07931 -8.94410 -8.33245 -6.97549 -6.53339 -4.25848 1.64453 1.80233 2.93320 3.14753 3.19347 3.27899 3.95278 4.49230 4.81795 4.85107 4.92852 5.31380 5.58314 5.78732 6.13542 6.28370 7.05843 7.52256 7.74284 8.36244 8.86771 8.99500 10.54430 Molecular weight = 182.02amu Principal moments of inertia in cm(-1) A = 0.074382 B = 0.012668 C = 0.010866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.343337 B = 2209.725203 C = 2576.223590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.073 3.927 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.110 0.890 9 S 0.128 5.872 10 C 0.135 3.865 11 C -0.243 4.243 12 C 0.146 3.854 13 N -0.570 5.570 14 C 0.298 3.702 15 N -0.522 5.522 16 H 0.275 0.725 17 H 0.136 0.864 18 H 0.154 0.846 19 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 -5.489 -0.023 6.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.136 4.136 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.687 4.687 8 H 0.128 0.872 9 S 0.376 5.624 10 C -0.120 4.120 11 C -0.276 4.276 12 C -0.018 4.018 13 N -0.291 5.291 14 C 0.005 3.995 15 N -0.243 5.243 16 H 0.085 0.915 17 H 0.154 0.846 18 H 0.171 0.829 19 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.400 -5.022 -0.025 5.566 hybrid contribution 0.937 0.817 -0.012 1.243 sum 3.337 -4.205 -0.037 5.368 Atomic orbital electron populations 1.69938 1.06228 1.28569 1.45941 1.25194 0.95152 0.99973 0.93301 0.85937 0.79620 0.80054 0.78698 1.19925 1.20648 1.19049 1.23454 0.97603 0.89730 1.57875 0.87244 1.83558 1.01970 0.97411 1.79467 1.24711 0.98023 0.96581 0.92674 1.22276 1.01149 0.93983 1.10223 1.22737 0.87943 0.99775 0.91322 1.68334 1.25239 1.15602 1.19934 1.24760 0.98576 0.85516 0.90602 1.68921 0.98985 1.38956 1.17418 0.91543 0.84595 0.82872 0.80209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.29 13.22 55.49 0.73 -23.56 13 2 C 0.07 1.98 5.49 -17.46 -0.10 1.88 13 3 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 13 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 13 5 H -0.28 -6.13 7.11 56.52 0.40 -5.72 13 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 13 7 C -0.54 -14.86 9.27 30.94 0.29 -14.58 13 8 H 0.11 3.06 6.57 -52.49 -0.35 2.72 13 9 S 0.13 3.20 21.68 -107.50 -2.33 0.87 13 10 C 0.13 3.04 7.00 -16.46 -0.12 2.93 13 11 C -0.24 -4.53 9.95 -39.07 -0.39 -4.92 13 12 C 0.15 2.46 11.29 -17.27 -0.19 2.27 13 13 N -0.57 -10.60 10.43 -14.66 -0.15 -10.76 13 14 C 0.30 5.80 12.28 -92.20 -1.13 4.66 13 15 N -0.52 -11.93 8.62 -13.36 -0.12 -12.05 13 16 H 0.27 7.11 8.31 -40.82 -0.34 6.77 13 17 H 0.14 2.16 8.06 -52.49 -0.42 1.74 13 18 H 0.15 1.93 8.06 -52.49 -0.42 1.51 13 19 H 0.18 2.85 8.06 -52.49 -0.42 2.43 13 LS Contribution 199.17 15.07 3.00 3.00 Total: -1.00 -29.82 199.17 -6.28 -36.10 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: -0.75 Total: -1.73 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -1.64 Total: -7.75 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.47 Total: -46.36 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -2.33 Total: 0.87 kcal Total LS contribution 3.00 Total: 3.00 kcal Total: -29.82 -6.28 -36.10 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082535431.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.022 kcal (2) G-P(sol) polarization free energy of solvation -29.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds