Wall clock time and date at job start Mon Mar 30 2020 02:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86800 * 120.00150 * 2 1 4 4 H 1.48503 * 109.46995 * 240.00186 * 3 2 1 5 5 H 1.48502 * 109.47212 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46954 * 120.00188 * 3 2 1 7 7 C 1.39929 * 119.99254 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99239 * 162.10526 * 7 2 1 9 9 C 1.41160 * 120.00480 * 342.38027 * 7 2 1 10 10 C 1.40766 * 120.27975 * 334.92850 * 9 7 2 11 11 C 1.36455 * 119.96994 * 180.02562 * 10 9 7 12 12 C 1.38829 * 120.56145 * 359.97438 * 11 10 9 13 13 C 1.38456 * 120.56431 * 0.02562 * 12 11 10 14 14 F 1.35097 * 119.99784 * 180.02562 * 13 12 11 15 15 C 1.38661 * 120.00661 * 359.71881 * 13 12 11 16 16 O 1.35702 * 120.27055 * 180.30201 * 15 13 12 17 17 H 0.97009 * 119.99473 * 359.97438 * 1 2 3 18 18 H 1.07999 * 120.01244 * 359.97438 * 10 9 7 19 19 H 1.08005 * 119.72356 * 179.97438 * 11 10 9 20 20 H 1.07997 * 119.72244 * 180.02562 * 12 11 10 21 21 H 0.96703 * 113.99872 * 270.23166 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6963 -1.2126 5 1 1.2778 2.7465 0.0006 6 1 3.0965 1.6963 1.2125 7 6 2.0082 -1.2119 -0.0005 8 1 3.0491 -1.2344 -0.2880 9 6 1.3520 -2.4059 0.3690 10 6 0.2260 -2.3650 1.2126 11 6 -0.4032 -3.5231 1.5662 12 6 0.0571 -4.7472 1.1003 13 6 1.1626 -4.8137 0.2693 14 9 1.6004 -6.0110 -0.1778 15 6 1.8166 -3.6511 -0.1091 16 8 2.8969 -3.7096 -0.9282 17 1 -0.4850 0.8402 0.0004 18 1 -0.1393 -1.4176 1.5806 19 1 -1.2666 -3.4872 2.2141 20 1 -0.4515 -5.6553 1.3884 21 1 3.7395 -3.7991 -0.4621 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083593304.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:28 Heat of formation + Delta-G solvation = -98.980882 kcal Electronic energy + Delta-G solvation = -10514.382844 eV Core-core repulsion = 8268.578351 eV Total energy + Delta-G solvation = -2245.804493 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -49.63485 -39.83432 -37.21000 -35.59571 -31.52860 -30.12346 -27.30742 -23.13299 -22.87707 -19.62853 -18.93768 -17.47545 -17.24974 -16.59830 -16.43182 -15.82208 -14.96536 -14.56336 -14.39395 -13.58404 -13.17268 -12.89714 -12.60610 -12.51186 -12.08847 -11.73209 -11.11480 -11.02721 -9.49368 -9.23125 -8.75682 -6.47155 0.70387 0.74674 1.39530 1.50286 1.53386 2.18176 2.57746 3.39930 3.57532 3.85750 4.38405 4.67126 4.89610 5.00151 5.18448 5.50742 5.56557 5.82843 5.92855 6.15539 6.44396 6.69913 6.74321 7.21489 8.20536 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.062136 B = 0.014300 C = 0.011997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.519397 B = 1957.531159 C = 2333.438254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.036 3.964 3 Si 0.991 3.009 4 H -0.263 1.263 5 H -0.263 1.263 6 H -0.255 1.255 7 C -0.472 4.472 8 H 0.082 0.918 9 C 0.080 3.920 10 C -0.181 4.181 11 C -0.080 4.080 12 C -0.268 4.268 13 C 0.082 3.918 14 F -0.159 7.159 15 C -0.082 4.082 16 O -0.494 6.494 17 H 0.295 0.705 18 H 0.119 0.881 19 H 0.136 0.864 20 H 0.132 0.868 21 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.492 0.660 2.920 3.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.182 4.182 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.187 1.187 6 H -0.179 1.179 7 C -0.500 4.500 8 H 0.100 0.900 9 C 0.077 3.923 10 C -0.200 4.200 11 C -0.098 4.098 12 C -0.288 4.288 13 C 0.063 3.937 14 F -0.137 7.137 15 C -0.128 4.128 16 O -0.302 6.302 17 H 0.106 0.894 18 H 0.136 0.864 19 H 0.153 0.847 20 H 0.150 0.850 21 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.860 0.817 2.429 2.703 hybrid contribution 0.704 0.197 0.092 0.737 sum 1.564 1.014 2.521 3.136 Atomic orbital electron populations 1.69859 1.09093 1.31472 1.33085 1.26881 0.95607 1.04778 0.90895 0.85110 0.78742 0.74867 0.80183 1.18689 1.18749 1.17946 1.19708 0.98747 0.91836 1.39673 0.90015 1.18138 0.92833 0.91905 0.89458 1.21097 0.99158 0.98155 1.01600 1.20625 0.99042 0.91320 0.98811 1.20587 1.00951 0.99359 1.07898 1.18211 0.97867 0.78882 0.98754 1.91322 1.89597 1.44472 1.88358 1.18769 0.96939 0.91639 1.05480 1.84754 1.15667 1.95701 1.34076 0.89352 0.86359 0.84653 0.84966 0.77311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.35 10.98 21.83 0.24 -40.11 14 2 C 0.04 1.72 5.14 85.25 0.44 2.15 14 3 Si 0.99 36.24 29.60 68.60 2.03 38.27 14 4 H -0.26 -9.51 7.11 99.48 0.71 -8.81 14 5 H -0.26 -8.98 7.11 99.48 0.71 -8.28 14 6 H -0.26 -9.01 7.11 99.48 0.71 -8.31 14 7 C -0.47 -24.87 8.71 23.40 0.20 -24.67 14 8 H 0.08 4.18 7.66 -2.91 -0.02 4.16 14 9 C 0.08 4.30 5.58 -21.21 -0.12 4.19 14 10 C -0.18 -9.10 8.64 22.47 0.19 -8.91 14 11 C -0.08 -3.51 9.96 21.99 0.22 -3.30 14 12 C -0.27 -11.85 10.02 22.46 0.23 -11.63 14 13 C 0.08 4.01 7.30 22.42 0.16 4.17 14 14 F -0.16 -7.34 17.11 44.97 0.77 -6.57 14 15 C -0.08 -4.25 6.75 23.11 0.16 -4.10 14 16 O -0.49 -23.91 12.67 -90.22 -1.14 -25.05 14 17 H 0.30 13.10 8.30 -92.70 -0.77 12.33 14 18 H 0.12 6.03 6.19 -2.91 -0.02 6.01 14 19 H 0.14 4.92 8.06 -2.91 -0.02 4.90 14 20 H 0.13 4.99 8.06 -2.91 -0.02 4.97 14 21 H 0.37 14.30 9.06 -74.06 -0.67 13.62 14 Total: -1.00 -58.92 201.10 3.97 -54.94 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.59 Total: 20.59 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 1.48 Total: -42.08 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.24 Total: -40.11 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -1.14 Total: -25.05 kcal Atomic # 9 Polarization: -7.34 SS G_CDS: 0.77 Total: -6.57 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.27 kcal Total: -58.92 3.97 -54.94 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083593304.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.037 kcal (2) G-P(sol) polarization free energy of solvation -58.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds