Wall clock time and date at job start Mon Mar 30 2020 01:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00086 * 2 1 4 4 N 1.46906 * 109.46853 * 125.00071 * 3 2 1 5 5 C 1.46900 * 110.99957 * 179.97438 * 4 3 2 6 6 C 1.52991 * 109.47106 * 174.70483 * 5 4 3 7 7 C 1.50696 * 115.55299 * 65.16637 * 6 5 4 8 8 H 1.07996 * 120.00374 * 264.96566 * 7 6 5 9 9 C 1.37889 * 119.99679 * 84.96596 * 7 6 5 10 10 N 1.31515 * 119.99745 * 353.06049 * 9 7 6 11 11 Si 1.86801 * 119.99949 * 173.06522 * 9 7 6 12 12 H 1.48500 * 109.47029 * 89.99587 * 11 9 7 13 13 H 1.48489 * 109.46886 * 209.99742 * 11 9 7 14 14 H 1.48500 * 109.46944 * 330.00119 * 11 9 7 15 15 C 1.53006 * 117.49928 * 279.49686 * 6 5 4 16 16 C 1.53000 * 117.49863 * 210.84146 * 6 5 4 17 17 H 1.07995 * 120.00181 * 179.97438 * 1 2 3 18 18 H 1.07997 * 120.00037 * 359.97438 * 1 2 3 19 19 H 1.07999 * 119.99834 * 180.02562 * 2 1 3 20 20 H 1.08995 * 109.47214 * 245.00092 * 3 2 1 21 21 H 1.08999 * 109.46777 * 5.00464 * 3 2 1 22 22 H 1.00901 * 110.99545 * 56.04637 * 4 3 2 23 23 H 1.09007 * 109.47075 * 294.70570 * 5 4 3 24 24 H 1.08998 * 109.46811 * 54.70033 * 5 4 3 25 25 H 0.96998 * 119.99603 * 185.04679 * 10 9 7 26 26 H 1.09007 * 117.49789 * 0.02562 * 15 6 5 27 27 H 1.08999 * 117.49849 * 145.01614 * 15 6 5 28 28 H 1.09002 * 117.49989 * 214.98068 * 16 6 5 29 29 H 1.08999 * 117.50260 * 359.97438 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1346 5 6 3.7505 2.5921 1.1664 6 6 4.6118 2.6393 2.4300 7 6 5.7068 1.6070 2.5092 8 1 5.5360 0.6775 3.0319 9 6 6.9269 1.8492 1.9141 10 7 7.0920 2.9164 1.1635 11 14 8.3450 0.6614 2.1741 12 1 8.3166 -0.3821 1.1179 13 1 9.6301 1.4020 2.1038 14 1 8.2154 0.0200 3.5071 15 6 3.9271 3.0444 3.7369 16 6 4.8897 4.0125 3.0446 17 1 -0.5400 -0.9353 -0.0004 18 1 -0.5400 0.9353 0.0004 19 1 1.8500 -0.9353 -0.0004 20 1 2.6213 1.4026 -0.9313 21 1 1.3586 2.1316 0.0897 22 1 3.6193 0.5385 1.1092 23 1 4.3918 2.6541 0.2870 24 1 3.0553 3.4316 1.1689 25 1 7.9259 3.0491 0.6861 26 1 2.8629 3.2770 3.6965 27 1 4.2689 2.5646 4.6539 28 1 5.8645 4.1692 3.5066 29 1 4.4593 4.8824 2.5486 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853467.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:47 Heat of formation + Delta-G solvation = 37.829622 kcal Electronic energy + Delta-G solvation = -10724.378861 eV Core-core repulsion = 8841.518978 eV Total energy + Delta-G solvation = -1882.859883 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.05123 -35.26538 -32.09374 -31.82545 -26.38451 -25.18908 -22.67005 -20.90798 -19.81756 -18.82745 -15.90538 -15.02894 -14.89171 -14.56354 -13.97466 -13.50643 -12.68898 -12.50597 -11.88508 -11.33390 -11.18878 -10.94555 -10.85026 -10.65574 -10.41965 -10.09859 -9.43039 -9.22431 -8.71372 -8.39947 -8.01830 -7.44235 -6.00683 -4.06609 2.52279 3.28642 3.36610 3.40729 4.41317 5.01510 5.26492 5.30054 5.46846 5.67199 5.86171 6.05190 6.09713 6.24527 6.51788 6.61438 6.81816 6.85857 6.88890 6.95604 7.04280 7.20659 7.56081 7.59244 7.90160 8.02576 8.31490 8.53037 8.96769 9.58829 11.07316 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.039894 B = 0.011854 C = 0.010171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.697877 B = 2361.466923 C = 2752.138489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 C 0.079 3.921 4 N -0.678 5.678 5 C 0.105 3.895 6 C 0.049 3.951 7 C -0.493 4.493 8 H 0.060 0.940 9 C 0.069 3.931 10 N -0.881 5.881 11 Si 0.888 3.112 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.200 4.200 16 C -0.162 4.162 17 H 0.092 0.908 18 H 0.093 0.907 19 H 0.106 0.894 20 H 0.030 0.970 21 H 0.066 0.934 22 H 0.347 0.653 23 H 0.035 0.965 24 H 0.037 0.963 25 H 0.259 0.741 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.004 -2.629 -2.046 7.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.152 4.152 3 C -0.050 4.050 4 N -0.309 5.309 5 C -0.024 4.024 6 C 0.048 3.952 7 C -0.531 4.531 8 H 0.078 0.922 9 C -0.133 4.133 10 N -0.518 5.518 11 Si 0.715 3.285 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.238 4.238 16 C -0.200 4.200 17 H 0.111 0.889 18 H 0.111 0.889 19 H 0.124 0.876 20 H 0.048 0.952 21 H 0.085 0.915 22 H 0.166 0.834 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.300 -2.262 -1.663 7.821 hybrid contribution 1.476 -0.680 -0.700 1.769 sum -5.824 -2.942 -2.362 6.940 Atomic orbital electron populations 1.23686 0.95847 1.01292 1.03105 1.22969 0.95981 0.98557 0.97689 1.21089 0.95828 0.94909 0.93171 1.60518 1.22920 1.06367 1.41113 1.21454 0.93069 0.88948 0.98922 1.18736 0.94496 0.93959 0.87960 1.20477 0.95300 1.02090 1.35243 0.92179 1.25015 0.98208 0.94969 0.95141 1.69996 1.25926 1.26804 1.29061 0.86662 0.82109 0.80941 0.78738 1.20775 1.21278 1.19785 1.22871 0.95622 1.06542 0.98735 1.22533 0.98643 0.93699 1.05167 0.88922 0.88859 0.87646 0.95162 0.91531 0.83427 0.94636 0.94491 0.93133 0.91687 0.90890 0.90329 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.58 14.32 29.01 0.42 -2.17 15 2 C -0.13 -1.95 9.78 -36.02 -0.35 -2.31 15 3 C 0.08 1.34 6.12 -4.97 -0.03 1.31 15 4 N -0.68 -13.80 6.46 -115.06 -0.74 -14.55 15 5 C 0.10 2.40 5.54 -3.83 -0.02 2.38 15 6 C 0.05 1.23 1.56 -155.66 -0.24 0.99 15 7 C -0.49 -13.36 8.33 -34.44 -0.29 -13.64 15 8 H 0.06 1.64 7.82 -52.49 -0.41 1.22 15 9 C 0.07 1.89 5.39 -17.81 -0.10 1.80 15 10 N -0.88 -24.92 12.95 55.43 0.72 -24.20 15 11 Si 0.89 21.00 29.55 -169.99 -5.02 15.98 15 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 15 C -0.20 -4.60 9.96 -26.69 -0.27 -4.87 15 16 C -0.16 -3.93 9.46 -26.70 -0.25 -4.19 15 17 H 0.09 1.02 8.06 -52.49 -0.42 0.60 15 18 H 0.09 1.14 7.84 -52.49 -0.41 0.73 15 19 H 0.11 1.47 8.06 -52.49 -0.42 1.04 15 20 H 0.03 0.52 8.14 -51.93 -0.42 0.09 15 21 H 0.07 1.09 7.79 -51.93 -0.40 0.68 15 22 H 0.35 7.30 8.29 -39.29 -0.33 6.98 15 23 H 0.04 0.89 8.14 -51.93 -0.42 0.47 15 24 H 0.04 0.81 8.08 -51.93 -0.42 0.39 15 25 H 0.26 7.02 8.32 -40.82 -0.34 6.68 15 26 H 0.06 1.39 8.14 -51.93 -0.42 0.97 15 27 H 0.07 1.66 8.14 -51.93 -0.42 1.24 15 28 H 0.08 2.02 8.14 -51.93 -0.42 1.59 15 29 H 0.06 1.37 8.14 -51.93 -0.42 0.95 15 LS Contribution 253.82 15.07 3.83 3.83 Total: -1.00 -27.77 253.82 -6.84 -34.61 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.49 Total: 5.03 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -1.13 Total: -20.70 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: -0.03 Total: -38.75 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.77 -6.84 -34.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853467.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.441 kcal (2) G-P(sol) polarization free energy of solvation -27.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds