Wall clock time and date at job start Mon Mar 30 2020 01:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00086 * 2 1 4 4 N 1.46906 * 109.46853 * 125.00071 * 3 2 1 5 5 C 1.46900 * 110.99957 * 179.97438 * 4 3 2 6 6 C 1.52991 * 109.47106 * 174.70483 * 5 4 3 7 7 C 1.50696 * 115.55299 * 65.16637 * 6 5 4 8 8 H 1.07996 * 120.00374 * 264.96566 * 7 6 5 9 9 C 1.37889 * 119.99679 * 84.96596 * 7 6 5 10 10 N 1.31515 * 119.99745 * 353.06049 * 9 7 6 11 11 Si 1.86801 * 119.99949 * 173.06522 * 9 7 6 12 12 H 1.48500 * 109.47029 * 89.99587 * 11 9 7 13 13 H 1.48489 * 109.46886 * 209.99742 * 11 9 7 14 14 H 1.48500 * 109.46944 * 330.00119 * 11 9 7 15 15 C 1.53006 * 117.49928 * 279.49686 * 6 5 4 16 16 C 1.53000 * 117.49863 * 210.84146 * 6 5 4 17 17 H 1.07995 * 120.00181 * 179.97438 * 1 2 3 18 18 H 1.07997 * 120.00037 * 359.97438 * 1 2 3 19 19 H 1.07999 * 119.99834 * 180.02562 * 2 1 3 20 20 H 1.08995 * 109.47214 * 245.00092 * 3 2 1 21 21 H 1.08999 * 109.46777 * 5.00464 * 3 2 1 22 22 H 1.00901 * 110.99545 * 56.04637 * 4 3 2 23 23 H 1.09007 * 109.47075 * 294.70570 * 5 4 3 24 24 H 1.08998 * 109.46811 * 54.70033 * 5 4 3 25 25 H 0.96998 * 119.99603 * 185.04679 * 10 9 7 26 26 H 1.09007 * 117.49789 * 0.02562 * 15 6 5 27 27 H 1.08999 * 117.49849 * 145.01614 * 15 6 5 28 28 H 1.09002 * 117.49989 * 214.98068 * 16 6 5 29 29 H 1.08999 * 117.50260 * 359.97438 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1346 5 6 3.7505 2.5921 1.1664 6 6 4.6118 2.6393 2.4300 7 6 5.7068 1.6070 2.5092 8 1 5.5360 0.6775 3.0319 9 6 6.9269 1.8492 1.9141 10 7 7.0920 2.9164 1.1635 11 14 8.3450 0.6614 2.1741 12 1 8.3166 -0.3821 1.1179 13 1 9.6301 1.4020 2.1038 14 1 8.2154 0.0200 3.5071 15 6 3.9271 3.0444 3.7369 16 6 4.8897 4.0125 3.0446 17 1 -0.5400 -0.9353 -0.0004 18 1 -0.5400 0.9353 0.0004 19 1 1.8500 -0.9353 -0.0004 20 1 2.6213 1.4026 -0.9313 21 1 1.3586 2.1316 0.0897 22 1 3.6193 0.5385 1.1092 23 1 4.3918 2.6541 0.2870 24 1 3.0553 3.4316 1.1689 25 1 7.9259 3.0491 0.6861 26 1 2.8629 3.2770 3.6965 27 1 4.2689 2.5646 4.6539 28 1 5.8645 4.1692 3.5066 29 1 4.4593 4.8824 2.5486 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853467.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:47 Heat of formation + Delta-G solvation = 20.945927 kcal Electronic energy + Delta-G solvation = -10725.110992 eV Core-core repulsion = 8841.518978 eV Total energy + Delta-G solvation = -1883.592015 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.84464 -36.75137 -33.99353 -33.37401 -28.09356 -27.09406 -24.23308 -22.80574 -21.27359 -20.46981 -17.90342 -16.65172 -16.43744 -16.19412 -15.74321 -15.12623 -14.51974 -13.89491 -13.49042 -13.10451 -12.96826 -12.85862 -12.63425 -12.29995 -12.00885 -11.86173 -11.29874 -10.72261 -10.41801 -10.40155 -9.88546 -9.09457 -8.08249 -6.19638 1.40973 1.43849 1.44158 1.53401 2.43553 3.19615 3.40384 3.82711 4.07381 4.32590 4.36400 4.58523 4.64528 4.73055 4.82386 4.97669 5.02342 5.06506 5.10502 5.28578 5.66561 5.68011 5.75459 5.80344 5.93736 6.35305 6.48543 6.63401 6.89358 7.48487 8.99293 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.039894 B = 0.011854 C = 0.010171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.697877 B = 2361.466923 C = 2752.138489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.081 3.919 4 N -0.678 5.678 5 C 0.118 3.882 6 C 0.023 3.977 7 C -0.505 4.505 8 H 0.053 0.947 9 C 0.025 3.975 10 N -0.910 5.910 11 Si 0.949 3.051 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.270 1.270 15 C -0.179 4.179 16 C -0.167 4.167 17 H 0.116 0.884 18 H 0.101 0.899 19 H 0.109 0.891 20 H 0.025 0.975 21 H 0.073 0.927 22 H 0.341 0.659 23 H 0.005 0.995 24 H 0.046 0.954 25 H 0.259 0.741 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.119 -3.444 -1.909 9.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.178 4.178 3 C -0.048 4.048 4 N -0.309 5.309 5 C -0.011 4.011 6 C 0.022 3.978 7 C -0.542 4.542 8 H 0.071 0.929 9 C -0.175 4.175 10 N -0.548 5.548 11 Si 0.775 3.225 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.195 1.195 15 C -0.216 4.216 16 C -0.205 4.205 17 H 0.134 0.866 18 H 0.119 0.881 19 H 0.127 0.873 20 H 0.043 0.957 21 H 0.091 0.909 22 H 0.158 0.842 23 H 0.023 0.977 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.433 -3.085 -1.523 9.108 hybrid contribution 1.730 -0.423 -0.739 1.928 sum -6.703 -3.507 -2.262 7.896 Atomic orbital electron populations 1.23951 0.95154 1.02786 0.99606 1.22858 0.96651 0.97470 1.00828 1.21138 0.95240 0.96758 0.91664 1.60517 1.22416 1.04898 1.43044 1.21193 0.92668 0.90620 0.96606 1.18919 0.95182 0.93875 0.89794 1.20696 0.96298 1.02316 1.34937 0.92900 1.25679 1.00387 0.96528 0.94907 1.70103 1.26409 1.28328 1.29912 0.85694 0.79001 0.79055 0.78744 1.20050 1.21322 1.19452 1.22848 0.96345 1.04793 0.97605 1.22461 0.98223 0.94144 1.05712 0.86616 0.88110 0.87254 0.95711 0.90889 0.84176 0.97722 0.93512 0.93235 0.89655 0.90926 0.92469 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.99 14.32 67.78 0.97 -3.02 15 2 C -0.16 -4.37 9.78 25.65 0.25 -4.12 15 3 C 0.08 2.64 6.12 85.56 0.52 3.16 15 4 N -0.68 -27.17 6.46 -517.93 -3.35 -30.52 15 5 C 0.12 5.42 5.54 86.30 0.48 5.89 15 6 C 0.02 1.14 1.56 -52.93 -0.08 1.06 15 7 C -0.50 -27.39 8.33 25.60 0.21 -27.17 15 8 H 0.05 2.88 7.82 -2.91 -0.02 2.85 15 9 C 0.03 1.36 5.39 84.66 0.46 1.82 15 10 N -0.91 -52.00 12.95 21.45 0.28 -51.73 15 11 Si 0.95 43.21 29.55 68.60 2.03 45.24 15 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 13 H -0.29 -13.02 7.11 99.48 0.71 -12.31 15 14 H -0.27 -12.04 7.11 99.48 0.71 -11.34 15 15 C -0.18 -7.96 9.96 30.62 0.30 -7.66 15 16 C -0.17 -8.07 9.46 30.62 0.29 -7.78 15 17 H 0.12 2.09 8.06 -2.91 -0.02 2.07 15 18 H 0.10 2.12 7.84 -2.91 -0.02 2.10 15 19 H 0.11 2.88 8.06 -2.91 -0.02 2.85 15 20 H 0.02 0.83 8.14 -2.39 -0.02 0.82 15 21 H 0.07 2.26 7.79 -2.39 -0.02 2.25 15 22 H 0.34 14.31 8.29 -89.69 -0.74 13.56 15 23 H 0.00 0.23 8.14 -2.38 -0.02 0.21 15 24 H 0.05 2.01 8.08 -2.39 -0.02 1.99 15 25 H 0.26 14.17 8.32 -92.71 -0.77 13.40 15 26 H 0.09 3.44 8.14 -2.38 -0.02 3.42 15 27 H 0.07 3.22 8.14 -2.39 -0.02 3.20 15 28 H 0.06 2.96 8.14 -2.39 -0.02 2.95 15 29 H 0.07 3.22 8.14 -2.39 -0.02 3.20 15 Total: -1.00 -57.75 253.82 2.72 -55.03 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.36 Total: 19.79 kcal Atomic # 6 Polarization: -41.21 SS G_CDS: 3.40 Total: -37.81 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -3.07 Total: -82.25 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -57.75 2.72 -55.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853467.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.976 kcal (2) G-P(sol) polarization free energy of solvation -57.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds