Wall clock time and date at job start Mon Mar 30 2020 02:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 C 1.33386 * 125.20177 * 239.99894 * 12 2 1 14 14 C 1.38423 * 114.91934 * 179.97438 * 13 12 2 15 15 C 1.33382 * 114.92452 * 359.97438 * 14 13 12 16 16 S 1.75887 * 109.59293 * 359.75798 * 15 14 13 17 17 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 18 18 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 19 19 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 20 20 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 21 21 H 1.08001 * 122.54160 * 359.97438 * 13 12 2 22 22 H 1.08001 * 122.53676 * 180.02562 * 14 13 12 23 23 H 1.07999 * 125.20642 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 6 2.0323 -0.7104 1.2306 13 6 2.8023 -0.1645 2.1730 14 6 3.1393 -1.0123 3.2141 15 6 2.6425 -2.2463 3.1175 16 16 1.6854 -2.3834 1.6481 17 1 -0.3633 0.5139 0.8899 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3634 -1.0276 -0.0005 20 1 0.7173 1.1669 -3.4844 21 1 3.1376 0.8611 2.1273 22 1 3.7570 -0.6980 4.0424 23 1 2.8005 -3.0390 3.8337 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084328349.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:44 Heat of formation + Delta-G solvation = 3.098060 kcal Electronic energy + Delta-G solvation = -8795.834000 eV Core-core repulsion = 7120.669158 eV Total energy + Delta-G solvation = -1675.164842 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 182.046 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.73677 -36.10749 -33.02523 -29.10569 -27.26037 -24.81499 -22.42138 -19.99032 -18.52527 -17.53108 -16.51827 -16.09110 -14.83088 -14.45259 -13.97461 -13.48040 -13.29898 -12.91367 -12.83022 -12.63096 -12.25987 -12.14657 -11.74266 -11.42781 -11.05517 -10.51130 -9.29743 -9.21335 -8.13601 -6.28568 0.35815 0.96372 1.39299 1.41202 1.41795 1.52186 2.04614 2.42418 3.14270 4.29424 4.36934 4.74492 4.83116 4.85137 5.03985 5.14630 5.34338 5.51674 5.59784 5.72316 5.85764 5.98876 6.27226 6.78373 7.39713 8.90994 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.060907 B = 0.013171 C = 0.012330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.607074 B = 2125.450623 C = 2270.361882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.096 3.904 3 H 0.016 0.984 4 C -0.528 4.528 5 H 0.051 0.949 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.270 1.270 12 C -0.137 4.137 13 C -0.188 4.188 14 C -0.130 4.130 15 C -0.235 4.235 16 S 0.068 5.932 17 H 0.028 0.972 18 H 0.064 0.936 19 H 0.029 0.971 20 H 0.264 0.736 21 H 0.134 0.866 22 H 0.164 0.836 23 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.243 -4.534 8.069 9.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.076 3.924 3 H 0.034 0.966 4 C -0.566 4.566 5 H 0.070 0.930 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.195 1.195 12 C -0.254 4.254 13 C -0.217 4.217 14 C -0.160 4.160 15 C -0.369 4.369 16 S 0.330 5.670 17 H 0.047 0.953 18 H 0.083 0.917 19 H 0.049 0.951 20 H 0.073 0.927 21 H 0.152 0.848 22 H 0.182 0.818 23 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.343 -5.580 7.288 9.276 hybrid contribution 0.987 1.024 -0.384 1.473 sum 2.329 -4.556 6.904 8.593 Atomic orbital electron populations 1.21664 0.97032 0.99254 1.00137 1.17377 0.93176 0.93801 0.88034 0.96573 1.21377 1.31696 1.12446 0.91104 0.93026 1.25701 0.95113 0.95617 1.01758 1.69992 1.37355 1.23791 1.24260 0.85587 0.78917 0.78433 0.78973 1.19890 1.20558 1.19488 1.25156 1.02518 0.97025 1.00730 1.20372 1.03243 1.02159 0.95949 1.20323 1.02687 0.92940 1.00096 1.25866 1.06590 1.02273 1.02202 1.84106 1.52097 1.11732 1.19026 0.95321 0.91685 0.95143 0.92689 0.84809 0.81840 0.79289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.11 8.89 71.98 0.64 -5.47 14 2 C 0.10 5.00 2.68 -12.28 -0.03 4.96 14 3 H 0.02 0.92 8.09 -2.39 -0.02 0.90 14 4 C -0.53 -29.50 8.47 25.60 0.22 -29.28 14 5 H 0.05 2.89 7.74 -2.91 -0.02 2.87 14 6 C 0.02 0.96 5.31 84.65 0.45 1.41 14 7 N -0.91 -52.56 11.33 21.45 0.24 -52.32 14 8 Si 0.96 43.76 29.54 68.60 2.03 45.79 14 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 14 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 14 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 14 12 C -0.14 -6.09 5.04 24.59 0.12 -5.97 14 13 C -0.19 -7.27 10.01 21.22 0.21 -7.06 14 14 C -0.13 -4.05 10.18 21.21 0.22 -3.84 14 15 C -0.23 -7.09 11.23 66.72 0.75 -6.34 14 16 S 0.07 2.61 23.01 -56.49 -1.30 1.31 14 17 H 0.03 1.27 8.14 -2.39 -0.02 1.25 14 18 H 0.06 3.52 6.08 -2.38 -0.01 3.51 14 19 H 0.03 1.45 7.99 -2.39 -0.02 1.43 14 20 H 0.26 14.35 8.31 -92.71 -0.77 13.58 14 21 H 0.13 4.92 8.06 -2.91 -0.02 4.90 14 22 H 0.16 3.83 8.06 -2.91 -0.02 3.81 14 23 H 0.19 4.20 8.06 -2.91 -0.02 4.17 14 Total: -1.00 -59.82 217.52 4.73 -55.09 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: 1.19 Total: 1.72 kcal Atomic # 6 Polarization: -54.16 SS G_CDS: 2.57 Total: -51.59 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.24 Total: -52.32 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.30 Total: 1.31 kcal Total: -59.82 4.73 -55.09 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328349.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.189 kcal (2) G-P(sol) polarization free energy of solvation -59.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds