Wall clock time and date at job start Mon Mar 30 2020 01:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00262 * 2 1 4 4 N 1.46896 * 109.47056 * 124.99812 * 3 2 1 5 5 C 1.47904 * 111.00054 * 69.88104 * 4 3 2 6 6 C 1.53995 * 107.05974 * 145.84166 * 5 4 3 7 7 C 1.54603 * 105.14000 * 358.77299 * 6 5 4 8 8 H 1.09000 * 110.72105 * 96.57841 * 7 6 5 9 9 C 1.50695 * 110.72429 * 219.68782 * 7 6 5 10 10 H 1.07995 * 120.00496 * 118.54590 * 9 7 6 11 11 C 1.37880 * 119.99572 * 298.54523 * 9 7 6 12 12 N 1.31511 * 120.00327 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99951 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47297 * 59.99744 * 13 11 9 15 15 H 1.48503 * 109.47261 * 299.99924 * 13 11 9 16 16 H 1.48500 * 109.47454 * 179.97438 * 13 11 9 17 17 C 1.48539 * 110.99804 * 187.27402 * 4 3 2 18 18 H 1.07998 * 119.99856 * 180.02562 * 1 2 3 19 19 H 1.07998 * 120.00173 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.00037 * 179.97438 * 2 1 3 21 21 H 1.09006 * 109.46546 * 4.99852 * 3 2 1 22 22 H 1.08990 * 109.47254 * 245.00342 * 3 2 1 23 23 H 1.08993 * 109.91739 * 26.48681 * 5 4 3 24 24 H 1.09002 * 109.91011 * 265.19066 * 5 4 3 25 25 H 1.08996 * 110.30427 * 239.85691 * 6 5 4 26 26 H 1.09000 * 110.30899 * 117.68338 * 6 5 4 27 27 H 0.97006 * 119.99995 * 359.97438 * 12 11 9 28 28 H 1.09002 * 110.66679 * 81.84200 * 17 4 3 29 29 H 1.08997 * 110.66367 * 318.71520 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1345 5 6 4.1073 0.3773 0.9299 6 6 5.3631 1.0028 1.5649 7 6 4.9004 2.3743 2.1083 8 1 4.6591 2.3073 3.1691 9 6 5.9528 3.4257 1.8680 10 1 5.7292 4.2821 1.2492 11 6 7.2012 3.2944 2.4383 12 7 7.4737 2.2513 3.1915 13 14 8.5057 4.5980 2.1412 14 1 8.0187 5.9087 2.6416 15 1 8.7846 4.6965 0.6859 16 1 9.7505 4.2257 2.8601 17 6 3.6305 2.6682 1.2707 18 1 -0.5400 -0.9353 0.0004 19 1 -0.5400 0.9353 0.0004 20 1 1.8500 -0.9353 0.0004 21 1 1.3585 2.1316 0.0895 22 1 2.6213 1.4026 -0.9313 23 1 4.2697 0.2195 -0.1362 24 1 3.8773 -0.5700 1.4176 25 1 6.1406 1.1366 0.8128 26 1 5.7271 0.3766 2.3794 27 1 6.7962 1.5744 3.3461 28 1 2.9705 3.3550 1.8006 29 1 3.8986 3.0681 0.2929 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084426607.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:49 Heat of formation + Delta-G solvation = 13.320968 kcal Electronic energy + Delta-G solvation = -10868.620133 eV Core-core repulsion = 8984.697475 eV Total energy + Delta-G solvation = -1883.922658 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.30622 -34.64380 -32.70497 -29.66489 -28.26797 -25.10520 -23.65283 -20.58362 -20.04793 -18.92601 -16.87550 -15.53064 -15.08121 -14.25483 -13.82129 -13.54820 -12.91254 -12.59573 -11.92966 -11.67806 -11.63485 -10.91266 -10.71004 -10.52851 -10.43505 -10.08993 -9.79522 -9.50757 -9.25513 -8.47468 -8.33728 -7.83031 -6.32169 -4.04836 2.39694 3.44213 3.45718 3.64587 4.52533 4.73870 5.03951 5.31381 5.40266 5.58777 5.67837 5.86074 5.90698 5.98320 6.11884 6.28989 6.40315 6.67890 6.70051 6.87494 6.93003 6.96276 7.26926 7.46457 7.61355 7.73652 8.27063 8.44271 8.90273 9.67804 11.06237 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.100281 B = 0.009283 C = 0.008852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 279.148741 B = 3015.588532 C = 3162.227242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C 0.069 3.931 4 N -0.520 5.520 5 C 0.038 3.962 6 C -0.122 4.122 7 C 0.036 3.964 8 H 0.028 0.972 9 C -0.597 4.597 10 H 0.049 0.951 11 C 0.020 3.980 12 N -0.912 5.912 13 Si 1.067 2.933 14 H -0.288 1.288 15 H -0.289 1.289 16 H -0.283 1.283 17 C 0.048 3.952 18 H 0.094 0.906 19 H 0.094 0.906 20 H 0.105 0.895 21 H 0.072 0.928 22 H 0.040 0.960 23 H 0.031 0.969 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.273 0.727 28 H 0.064 0.936 29 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.197 -2.604 -5.743 10.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.151 4.151 3 C -0.059 4.059 4 N -0.244 5.244 5 C -0.090 4.090 6 C -0.160 4.160 7 C 0.017 3.983 8 H 0.046 0.954 9 C -0.636 4.636 10 H 0.067 0.933 11 C -0.184 4.184 12 N -0.548 5.548 13 Si 0.896 3.104 14 H -0.215 1.215 15 H -0.216 1.216 16 H -0.208 1.208 17 C -0.079 4.079 18 H 0.112 0.888 19 H 0.112 0.888 20 H 0.123 0.877 21 H 0.091 0.909 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.929 -2.320 -4.925 8.812 hybrid contribution -1.203 -0.315 -1.174 1.710 sum -8.132 -2.635 -6.100 10.501 Atomic orbital electron populations 1.23711 0.95761 1.01439 1.02801 1.22907 0.95852 0.98397 0.97914 1.21400 0.96042 0.95467 0.92984 1.64825 1.14909 1.06912 1.37747 1.22908 0.91915 0.96092 0.98096 1.22638 0.94994 0.98781 0.99623 1.19697 0.91452 0.92504 0.94623 0.95374 1.21932 0.98721 1.08142 1.34759 0.93311 1.25776 0.98797 1.00246 0.93598 1.70781 1.37942 1.10444 1.35659 0.83566 0.75923 0.74876 0.76044 1.21467 1.21571 1.20799 1.23264 0.96531 0.88907 0.99229 0.88760 0.88771 0.87700 0.90910 0.94232 0.95068 0.91928 0.92105 0.92735 0.91499 0.91727 0.94512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.43 14.32 29.02 0.42 -2.02 15 2 C -0.13 -1.88 9.35 -36.02 -0.34 -2.21 15 3 C 0.07 1.12 5.21 -4.98 -0.03 1.10 15 4 N -0.52 -10.25 5.26 -231.89 -1.22 -11.47 15 5 C 0.04 0.75 6.05 -2.75 -0.02 0.73 15 6 C -0.12 -2.87 5.34 -25.37 -0.14 -3.01 15 7 C 0.04 0.93 2.62 -89.91 -0.24 0.70 15 8 H 0.03 0.78 8.08 -51.93 -0.42 0.36 15 9 C -0.60 -16.81 8.42 -34.44 -0.29 -17.10 15 10 H 0.05 1.36 7.78 -52.49 -0.41 0.95 15 11 C 0.02 0.58 5.33 -17.82 -0.10 0.49 15 12 N -0.91 -27.41 13.42 55.43 0.74 -26.67 15 13 Si 1.07 25.14 29.90 -169.99 -5.08 20.06 15 14 H -0.29 -6.50 7.11 56.52 0.40 -6.10 15 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 16 H -0.28 -6.68 7.11 56.52 0.40 -6.27 15 17 C 0.05 1.05 5.95 -1.89 -0.01 1.03 15 18 H 0.09 0.98 8.06 -52.49 -0.42 0.56 15 19 H 0.09 1.08 7.84 -52.49 -0.41 0.67 15 20 H 0.10 1.45 7.89 -52.49 -0.41 1.03 15 21 H 0.07 1.11 7.77 -51.93 -0.40 0.71 15 22 H 0.04 0.64 7.81 -51.93 -0.41 0.24 15 23 H 0.03 0.58 7.57 -51.93 -0.39 0.19 15 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 25 H 0.06 1.53 7.84 -51.93 -0.41 1.12 15 26 H 0.05 1.31 6.97 -51.93 -0.36 0.95 15 27 H 0.27 8.13 5.53 -40.82 -0.23 7.91 15 28 H 0.06 1.37 8.14 -51.93 -0.42 0.94 15 29 H 0.04 0.81 7.92 -51.93 -0.41 0.40 15 LS Contribution 239.83 15.07 3.61 3.61 Total: -1.00 -29.50 239.83 -7.00 -36.50 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.33 Total: -1.74 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -0.73 Total: -20.29 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.47 Total: -38.14 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.08 Total: 20.06 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.50 -7.00 -36.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084426607.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.825 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds