Wall clock time and date at job start Mon Mar 30 2020 01:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00262 * 2 1 4 4 N 1.46896 * 109.47056 * 124.99812 * 3 2 1 5 5 C 1.47904 * 111.00054 * 69.88104 * 4 3 2 6 6 C 1.53995 * 107.05974 * 145.84166 * 5 4 3 7 7 C 1.54603 * 105.14000 * 358.77299 * 6 5 4 8 8 H 1.09000 * 110.72105 * 96.57841 * 7 6 5 9 9 C 1.50695 * 110.72429 * 219.68782 * 7 6 5 10 10 H 1.07995 * 120.00496 * 118.54590 * 9 7 6 11 11 C 1.37880 * 119.99572 * 298.54523 * 9 7 6 12 12 N 1.31511 * 120.00327 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99951 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47297 * 59.99744 * 13 11 9 15 15 H 1.48503 * 109.47261 * 299.99924 * 13 11 9 16 16 H 1.48500 * 109.47454 * 179.97438 * 13 11 9 17 17 C 1.48539 * 110.99804 * 187.27402 * 4 3 2 18 18 H 1.07998 * 119.99856 * 180.02562 * 1 2 3 19 19 H 1.07998 * 120.00173 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.00037 * 179.97438 * 2 1 3 21 21 H 1.09006 * 109.46546 * 4.99852 * 3 2 1 22 22 H 1.08990 * 109.47254 * 245.00342 * 3 2 1 23 23 H 1.08993 * 109.91739 * 26.48681 * 5 4 3 24 24 H 1.09002 * 109.91011 * 265.19066 * 5 4 3 25 25 H 1.08996 * 110.30427 * 239.85691 * 6 5 4 26 26 H 1.09000 * 110.30899 * 117.68338 * 6 5 4 27 27 H 0.97006 * 119.99995 * 359.97438 * 12 11 9 28 28 H 1.09002 * 110.66679 * 81.84200 * 17 4 3 29 29 H 1.08997 * 110.66367 * 318.71520 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1345 5 6 4.1073 0.3773 0.9299 6 6 5.3631 1.0028 1.5649 7 6 4.9004 2.3743 2.1083 8 1 4.6591 2.3073 3.1691 9 6 5.9528 3.4257 1.8680 10 1 5.7292 4.2821 1.2492 11 6 7.2012 3.2944 2.4383 12 7 7.4737 2.2513 3.1915 13 14 8.5057 4.5980 2.1412 14 1 8.0187 5.9087 2.6416 15 1 8.7846 4.6965 0.6859 16 1 9.7505 4.2257 2.8601 17 6 3.6305 2.6682 1.2707 18 1 -0.5400 -0.9353 0.0004 19 1 -0.5400 0.9353 0.0004 20 1 1.8500 -0.9353 0.0004 21 1 1.3585 2.1316 0.0895 22 1 2.6213 1.4026 -0.9313 23 1 4.2697 0.2195 -0.1362 24 1 3.8773 -0.5700 1.4176 25 1 6.1406 1.1366 0.8128 26 1 5.7271 0.3766 2.3794 27 1 6.7962 1.5744 3.3461 28 1 2.9705 3.3550 1.8006 29 1 3.8986 3.0681 0.2929 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084426607.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:48 Heat of formation + Delta-G solvation = -5.645417 kcal Electronic energy + Delta-G solvation = -10869.442577 eV Core-core repulsion = 8984.697475 eV Total energy + Delta-G solvation = -1884.745102 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.97651 -36.21199 -34.41982 -31.35370 -30.08974 -26.77124 -25.50737 -22.11822 -21.85044 -20.29308 -18.92042 -17.09519 -16.60005 -15.82080 -15.67286 -15.02256 -14.60857 -14.16361 -13.60824 -13.54919 -13.15499 -12.76110 -12.34806 -12.10942 -11.94041 -11.87040 -11.71329 -11.35283 -10.63139 -10.49560 -10.35506 -9.37209 -8.59350 -6.33258 1.37384 1.53679 1.61412 1.80722 2.57851 3.17930 3.23944 3.84308 3.92133 4.15734 4.25458 4.33842 4.42504 4.49569 4.68732 4.73325 4.83146 5.00142 5.04286 5.10024 5.31813 5.58823 5.68813 5.78177 5.87338 6.13030 6.15749 6.22594 6.65119 7.48138 8.79463 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.100281 B = 0.009283 C = 0.008852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 279.148741 B = 3015.588532 C = 3162.227242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.159 4.159 3 C 0.070 3.930 4 N -0.525 5.525 5 C 0.049 3.951 6 C -0.114 4.114 7 C 0.023 3.977 8 H -0.002 1.002 9 C -0.612 4.612 10 H 0.047 0.953 11 C -0.029 4.029 12 N -0.937 5.937 13 Si 1.115 2.885 14 H -0.271 1.271 15 H -0.271 1.271 16 H -0.285 1.285 17 C 0.059 3.941 18 H 0.116 0.884 19 H 0.103 0.897 20 H 0.107 0.893 21 H 0.082 0.918 22 H 0.040 0.960 23 H 0.046 0.954 24 H 0.079 0.921 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.262 0.738 28 H 0.070 0.930 29 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.346 -2.525 -6.828 11.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.178 4.178 3 C -0.058 4.058 4 N -0.249 5.249 5 C -0.079 4.079 6 C -0.153 4.153 7 C 0.004 3.996 8 H 0.016 0.984 9 C -0.650 4.650 10 H 0.065 0.935 11 C -0.228 4.228 12 N -0.574 5.574 13 Si 0.936 3.064 14 H -0.197 1.197 15 H -0.197 1.197 16 H -0.210 1.210 17 C -0.068 4.068 18 H 0.134 0.866 19 H 0.121 0.879 20 H 0.125 0.875 21 H 0.100 0.900 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.098 0.902 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.113 -2.249 -6.024 10.352 hybrid contribution -0.948 -0.357 -0.830 1.310 sum -9.061 -2.606 -6.854 11.656 Atomic orbital electron populations 1.23978 0.95106 1.02925 0.99255 1.22803 0.96534 0.97337 1.01109 1.21475 0.95492 0.97321 0.91495 1.64822 1.14791 1.05251 1.40073 1.22807 0.90016 0.96372 0.98733 1.22431 0.96325 0.97877 0.98637 1.19691 0.93025 0.93261 0.93617 0.98413 1.22298 0.99596 1.08671 1.34410 0.93455 1.27230 1.01353 1.01379 0.92826 1.70893 1.37871 1.11302 1.37351 0.82962 0.73363 0.73081 0.76950 1.19651 1.19684 1.21024 1.23037 0.95044 0.90456 0.98304 0.86609 0.87915 0.87463 0.89956 0.94197 0.93554 0.90235 0.94231 0.94151 0.92665 0.91170 0.94690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.63 14.32 67.78 0.97 -2.66 15 2 C -0.16 -4.07 9.35 25.65 0.24 -3.83 15 3 C 0.07 2.10 5.21 85.56 0.45 2.55 15 4 N -0.53 -20.00 5.26 -887.56 -4.66 -24.66 15 5 C 0.05 1.87 6.05 86.45 0.52 2.39 15 6 C -0.11 -5.48 5.34 31.48 0.17 -5.31 15 7 C 0.02 1.21 2.62 -10.33 -0.03 1.18 15 8 H 0.00 -0.13 8.08 -2.39 -0.02 -0.15 15 9 C -0.61 -34.88 8.42 25.60 0.22 -34.66 15 10 H 0.05 2.65 7.78 -2.91 -0.02 2.62 15 11 C -0.03 -1.68 5.33 84.66 0.45 -1.23 15 12 N -0.94 -57.51 13.42 21.45 0.29 -57.23 15 13 Si 1.11 50.37 29.90 68.60 2.05 52.42 15 14 H -0.27 -11.43 7.11 99.48 0.71 -10.73 15 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 16 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 17 C 0.06 2.56 5.95 86.65 0.52 3.08 15 18 H 0.12 1.93 8.06 -2.91 -0.02 1.91 15 19 H 0.10 1.96 7.84 -2.91 -0.02 1.94 15 20 H 0.11 2.68 7.89 -2.91 -0.02 2.65 15 21 H 0.08 2.31 7.77 -2.38 -0.02 2.29 15 22 H 0.04 1.21 7.81 -2.39 -0.02 1.19 15 23 H 0.05 1.64 7.57 -2.39 -0.02 1.63 15 24 H 0.08 2.81 8.14 -2.39 -0.02 2.79 15 25 H 0.04 2.02 7.84 -2.39 -0.02 2.00 15 26 H 0.04 2.00 6.97 -2.39 -0.02 1.98 15 27 H 0.26 16.20 5.53 -92.70 -0.51 15.69 15 28 H 0.07 2.93 8.14 -2.39 -0.02 2.91 15 29 H 0.03 1.51 7.92 -2.39 -0.02 1.50 15 Total: -1.00 -63.17 239.83 2.53 -60.64 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.35 Total: 7.32 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 3.50 Total: -38.49 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -4.38 Total: -81.89 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 2.05 Total: 52.42 kcal Total: -63.17 2.53 -60.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084426607.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.994 kcal (2) G-P(sol) polarization free energy of solvation -63.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds