Wall clock time and date at job start Mon Mar 30 2020 02:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47627 * 2 1 4 4 C 1.50697 * 109.47094 * 239.99833 * 2 1 3 5 5 H 1.08003 * 120.00440 * 267.81152 * 4 2 1 6 6 C 1.37878 * 119.99969 * 87.81485 * 4 2 1 7 7 N 1.31510 * 119.99809 * 353.80327 * 6 4 2 8 8 Si 1.86803 * 120.00114 * 173.53425 * 6 4 2 9 9 H 1.48493 * 109.47116 * 89.99484 * 8 6 4 10 10 H 1.48492 * 109.46984 * 209.99861 * 8 6 4 11 11 H 1.48497 * 109.46909 * 329.99550 * 8 6 4 12 12 N 1.46905 * 109.46840 * 119.99985 * 2 1 3 13 13 C 1.47660 * 110.99959 * 198.67269 * 12 2 1 14 14 C 1.52650 * 87.64338 * 137.99896 * 13 12 2 15 15 C 1.52121 * 129.73106 * 113.72477 * 14 13 12 16 16 C 1.52117 * 129.73266 * 195.53050 * 14 13 12 17 17 C 1.47651 * 111.00001 * 294.99382 * 12 2 1 18 18 H 1.08989 * 109.47444 * 186.47764 * 1 2 3 19 19 H 1.09007 * 109.47180 * 306.48288 * 1 2 3 20 20 H 1.08999 * 109.47025 * 66.47526 * 1 2 3 21 21 H 0.96994 * 120.00648 * 354.59745 * 7 6 4 22 22 H 1.08991 * 113.52935 * 252.69378 * 13 12 2 23 23 H 1.09010 * 113.52209 * 23.31413 * 13 12 2 24 24 H 1.09003 * 117.52264 * 226.40150 * 15 14 13 25 25 H 1.09003 * 117.51666 * 11.54774 * 15 14 13 26 26 H 1.09005 * 117.52078 * 348.44772 * 16 14 13 27 27 H 1.09005 * 117.52713 * 133.55468 * 16 14 13 28 28 H 1.08999 * 113.52712 * 336.69949 * 17 12 2 29 29 H 1.09009 * 113.51682 * 107.24254 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2460 -1.7685 -1.1938 6 6 2.2191 -0.0097 -2.4031 7 7 1.8452 1.2485 -2.4839 8 14 3.0103 -0.8453 -3.8746 9 1 1.9577 -1.4765 -4.7104 10 1 3.7443 0.1628 -4.6808 11 1 3.9579 -1.8865 -3.4022 12 7 2.0196 -0.6925 1.1995 13 6 3.4272 -0.3421 1.4753 14 6 3.0492 -0.2497 2.9513 15 6 3.4866 -1.1156 4.1231 16 6 3.8039 0.3831 4.1106 17 6 1.6468 0.0430 2.4243 18 1 -0.3634 -1.0210 0.1159 19 1 -0.3634 0.6111 0.8263 20 1 -0.3633 0.4102 -0.9422 21 1 1.3677 1.6609 -1.7472 22 1 4.1274 -1.1479 1.2552 23 1 3.7308 0.6117 1.0435 24 1 2.7140 -1.4611 4.8100 25 1 4.3129 -1.8069 3.9576 26 1 4.8391 0.6774 3.9370 27 1 3.2403 1.0238 4.7889 28 1 1.4581 1.1030 2.2549 29 1 0.8557 -0.4401 2.9980 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681183.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:03 Heat of formation + Delta-G solvation = 56.352857 kcal Electronic energy + Delta-G solvation = -11021.711705 eV Core-core repulsion = 9139.655050 eV Total energy + Delta-G solvation = -1882.056655 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.67777 -35.33356 -32.97950 -29.74195 -25.86431 -24.46053 -23.85995 -22.25504 -20.00850 -18.04971 -16.81603 -15.21855 -15.12623 -14.23891 -13.69764 -13.58740 -13.02651 -12.14209 -11.79502 -11.32098 -11.27028 -11.06516 -10.83462 -10.69520 -10.33664 -10.08918 -9.86857 -9.70846 -9.49253 -8.59816 -8.31150 -7.77155 -6.35749 -4.06536 3.44513 3.47882 3.64376 4.00332 4.52777 4.62657 4.96602 5.04401 5.30438 5.39148 5.79186 5.90600 5.96323 6.04662 6.12057 6.24500 6.30803 6.37707 6.44417 6.46676 6.65370 6.76773 6.96190 7.11417 7.61408 8.00680 8.27489 8.61063 8.87265 9.65411 11.01596 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.059446 B = 0.011535 C = 0.010559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.901947 B = 2426.797292 C = 2651.098997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.161 3.839 3 H 0.011 0.989 4 C -0.580 4.580 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 1.070 2.930 9 H -0.288 1.288 10 H -0.284 1.284 11 H -0.288 1.288 12 N -0.457 5.457 13 C 0.061 3.939 14 C -0.169 4.169 15 C -0.144 4.144 16 C -0.172 4.172 17 C 0.035 3.965 18 H 0.045 0.955 19 H 0.016 0.984 20 H 0.051 0.949 21 H 0.268 0.732 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.337 -1.597 9.359 9.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.053 3.947 3 H 0.029 0.971 4 C -0.618 4.618 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.551 5.551 8 Si 0.898 3.102 9 H -0.215 1.215 10 H -0.210 1.210 11 H -0.214 1.214 12 N -0.180 5.180 13 C -0.068 4.068 14 C -0.170 4.170 15 C -0.181 4.181 16 C -0.210 4.210 17 C -0.094 4.094 18 H 0.064 0.936 19 H 0.035 0.965 20 H 0.070 0.930 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.083 0.917 24 H 0.110 0.890 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.644 -2.023 7.655 8.348 hybrid contribution -0.455 0.651 1.551 1.743 sum 2.188 -1.371 9.206 9.561 Atomic orbital electron populations 1.21874 0.98507 0.99668 0.98893 1.20016 0.91991 0.93107 0.89557 0.97112 1.21840 1.47752 0.97262 0.94994 0.92594 1.25850 0.96162 0.95686 1.00868 1.70768 1.36820 1.12397 1.35110 0.83535 0.76416 0.75064 0.75144 1.21483 1.21005 1.21420 1.69011 1.03554 1.44036 1.01403 1.22979 0.94235 1.00156 0.89435 1.22302 0.98278 1.04921 0.91490 1.22579 1.02686 0.93192 0.99595 1.22734 1.00865 0.95783 1.01621 1.23203 0.94128 0.97661 0.94405 0.93617 0.96521 0.92993 0.92068 0.90795 0.91684 0.88998 0.88837 0.88964 0.89111 0.92164 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.91 37.16 0.33 -2.80 15 2 C 0.16 4.14 1.29 -68.87 -0.09 4.06 15 3 H 0.01 0.31 6.42 -51.93 -0.33 -0.02 15 4 C -0.58 -16.59 8.34 -34.44 -0.29 -16.88 15 5 H 0.06 1.65 7.82 -52.48 -0.41 1.24 15 6 C 0.02 0.52 5.45 -17.82 -0.10 0.43 15 7 N -0.91 -27.62 13.56 55.43 0.75 -26.87 15 8 Si 1.07 25.50 29.91 -169.99 -5.08 20.42 15 9 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 11 H -0.29 -6.60 7.11 56.52 0.40 -6.19 15 12 N -0.46 -10.48 6.11 -237.34 -1.45 -11.93 15 13 C 0.06 1.26 7.46 -6.78 -0.05 1.21 15 14 C -0.17 -2.91 3.38 -155.77 -0.53 -3.43 15 15 C -0.14 -2.02 10.53 -27.08 -0.29 -2.30 15 16 C -0.17 -2.37 10.53 -27.08 -0.29 -2.66 15 17 C 0.04 0.67 6.71 -6.79 -0.05 0.62 15 18 H 0.04 1.07 8.14 -51.94 -0.42 0.65 15 19 H 0.02 0.34 7.54 -51.92 -0.39 -0.05 15 20 H 0.05 1.30 7.78 -51.93 -0.40 0.90 15 21 H 0.27 8.07 6.43 -40.82 -0.26 7.81 15 22 H 0.07 1.51 8.14 -51.93 -0.42 1.09 15 23 H 0.07 1.42 7.63 -51.92 -0.40 1.02 15 24 H 0.09 1.18 8.14 -51.93 -0.42 0.76 15 25 H 0.09 1.24 8.14 -51.93 -0.42 0.81 15 26 H 0.09 1.18 8.14 -51.93 -0.42 0.76 15 27 H 0.09 1.13 8.14 -51.93 -0.42 0.70 15 28 H 0.06 1.16 7.82 -51.93 -0.41 0.75 15 29 H 0.07 1.26 8.14 -51.92 -0.42 0.84 15 LS Contribution 241.95 15.07 3.65 3.65 Total: -1.00 -30.15 241.95 -7.83 -37.99 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.36 Total: -1.50 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -1.34 Total: -21.75 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: -0.70 Total: -38.80 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.15 -7.83 -37.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681183.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.338 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds