Wall clock time and date at job start Mon Mar 30 2020 02:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47627 * 2 1 4 4 C 1.50697 * 109.47094 * 239.99833 * 2 1 3 5 5 H 1.08003 * 120.00440 * 267.81152 * 4 2 1 6 6 C 1.37878 * 119.99969 * 87.81485 * 4 2 1 7 7 N 1.31510 * 119.99809 * 353.80327 * 6 4 2 8 8 Si 1.86803 * 120.00114 * 173.53425 * 6 4 2 9 9 H 1.48493 * 109.47116 * 89.99484 * 8 6 4 10 10 H 1.48492 * 109.46984 * 209.99861 * 8 6 4 11 11 H 1.48497 * 109.46909 * 329.99550 * 8 6 4 12 12 N 1.46905 * 109.46840 * 119.99985 * 2 1 3 13 13 C 1.47660 * 110.99959 * 198.67269 * 12 2 1 14 14 C 1.52650 * 87.64338 * 137.99896 * 13 12 2 15 15 C 1.52121 * 129.73106 * 113.72477 * 14 13 12 16 16 C 1.52117 * 129.73266 * 195.53050 * 14 13 12 17 17 C 1.47651 * 111.00001 * 294.99382 * 12 2 1 18 18 H 1.08989 * 109.47444 * 186.47764 * 1 2 3 19 19 H 1.09007 * 109.47180 * 306.48288 * 1 2 3 20 20 H 1.08999 * 109.47025 * 66.47526 * 1 2 3 21 21 H 0.96994 * 120.00648 * 354.59745 * 7 6 4 22 22 H 1.08991 * 113.52935 * 252.69378 * 13 12 2 23 23 H 1.09010 * 113.52209 * 23.31413 * 13 12 2 24 24 H 1.09003 * 117.52264 * 226.40150 * 15 14 13 25 25 H 1.09003 * 117.51666 * 11.54774 * 15 14 13 26 26 H 1.09005 * 117.52078 * 348.44772 * 16 14 13 27 27 H 1.09005 * 117.52713 * 133.55468 * 16 14 13 28 28 H 1.08999 * 113.52712 * 336.69949 * 17 12 2 29 29 H 1.09009 * 113.51682 * 107.24254 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2460 -1.7685 -1.1938 6 6 2.2191 -0.0097 -2.4031 7 7 1.8452 1.2485 -2.4839 8 14 3.0103 -0.8453 -3.8746 9 1 1.9577 -1.4765 -4.7104 10 1 3.7443 0.1628 -4.6808 11 1 3.9579 -1.8865 -3.4022 12 7 2.0196 -0.6925 1.1995 13 6 3.4272 -0.3421 1.4753 14 6 3.0492 -0.2497 2.9513 15 6 3.4866 -1.1156 4.1231 16 6 3.8039 0.3831 4.1106 17 6 1.6468 0.0430 2.4243 18 1 -0.3634 -1.0210 0.1159 19 1 -0.3634 0.6111 0.8263 20 1 -0.3633 0.4102 -0.9422 21 1 1.3677 1.6609 -1.7472 22 1 4.1274 -1.1479 1.2552 23 1 3.7308 0.6117 1.0435 24 1 2.7140 -1.4611 4.8100 25 1 4.3129 -1.8069 3.9576 26 1 4.8391 0.6774 3.9370 27 1 3.2403 1.0238 4.7889 28 1 1.4581 1.1030 2.2549 29 1 0.8557 -0.4401 2.9980 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681183.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:03 Heat of formation + Delta-G solvation = 36.031256 kcal Electronic energy + Delta-G solvation = -11022.592916 eV Core-core repulsion = 9139.655050 eV Total energy + Delta-G solvation = -1882.937866 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.23707 -36.96749 -34.86749 -31.69621 -27.68240 -26.28628 -25.74090 -23.35739 -21.95257 -19.51822 -18.84712 -16.95880 -16.38614 -16.02041 -15.58395 -15.34396 -14.69939 -13.90167 -13.41682 -13.33012 -12.95486 -12.63688 -12.59463 -12.34120 -12.15695 -11.95174 -11.36831 -11.15555 -10.94331 -10.65145 -10.45930 -9.58323 -8.65300 -6.36817 1.50923 1.59212 1.78157 2.53683 2.74932 3.12691 3.28756 3.49673 3.70795 4.03107 4.40858 4.46247 4.49867 4.57857 4.65734 4.73517 4.75336 4.77179 4.91461 4.96370 5.01690 5.11890 5.18516 5.27845 5.68943 5.96253 6.12693 6.44543 6.64829 7.42951 8.72321 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.059446 B = 0.011535 C = 0.010559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.901947 B = 2426.797292 C = 2651.098997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.163 3.837 3 H -0.018 1.018 4 C -0.593 4.593 5 H 0.042 0.958 6 C -0.029 4.029 7 N -0.936 5.936 8 Si 1.116 2.884 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.275 1.275 12 N -0.476 5.476 13 C 0.054 3.946 14 C -0.186 4.186 15 C -0.128 4.128 16 C -0.151 4.151 17 C 0.037 3.963 18 H 0.047 0.953 19 H 0.042 0.958 20 H 0.031 0.969 21 H 0.257 0.743 22 H 0.068 0.932 23 H 0.042 0.958 24 H 0.110 0.890 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.054 0.946 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.806 -2.327 10.788 11.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.055 3.945 3 H 0.000 1.000 4 C -0.631 4.631 5 H 0.060 0.940 6 C -0.227 4.227 7 N -0.574 5.574 8 Si 0.938 3.062 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.200 1.200 12 N -0.199 5.199 13 C -0.075 4.075 14 C -0.187 4.187 15 C -0.164 4.164 16 C -0.188 4.188 17 C -0.092 4.092 18 H 0.066 0.934 19 H 0.060 0.940 20 H 0.050 0.950 21 H 0.067 0.933 22 H 0.087 0.913 23 H 0.060 0.940 24 H 0.129 0.871 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.129 0.871 28 H 0.072 0.928 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.104 -2.760 9.113 10.015 hybrid contribution -0.591 0.873 1.196 1.594 sum 2.513 -1.887 10.310 10.778 Atomic orbital electron populations 1.21699 0.97217 1.00055 0.98833 1.19862 0.92939 0.91407 0.90320 1.00046 1.22103 1.47769 0.96758 0.96491 0.93966 1.27253 0.96098 0.95589 1.03776 1.70883 1.38193 1.13381 1.34928 0.82949 0.76295 0.74609 0.72373 1.19831 1.20637 1.19979 1.68907 1.05029 1.44409 1.01543 1.22907 0.93079 0.98715 0.92778 1.22090 0.96493 1.09571 0.90516 1.22783 1.03018 0.93652 0.96967 1.22900 1.01058 0.96118 0.98716 1.23177 0.96161 0.97004 0.92814 0.93427 0.93953 0.95027 0.93295 0.91316 0.93973 0.87127 0.87883 0.87888 0.87122 0.92818 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 8.91 71.98 0.64 -5.13 15 2 C 0.16 8.59 1.29 44.17 0.06 8.64 15 3 H -0.02 -1.05 6.42 -2.39 -0.02 -1.06 15 4 C -0.59 -34.62 8.34 25.60 0.21 -34.40 15 5 H 0.04 2.53 7.82 -2.91 -0.02 2.50 15 6 C -0.03 -1.69 5.45 84.66 0.46 -1.23 15 7 N -0.94 -57.79 13.56 21.45 0.29 -57.50 15 8 Si 1.12 51.43 29.91 68.60 2.05 53.48 15 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 10 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 12 N -0.48 -21.89 6.11 -904.82 -5.53 -27.42 15 13 C 0.05 2.27 7.46 83.97 0.63 2.89 15 14 C -0.19 -6.03 3.38 -53.00 -0.18 -6.20 15 15 C -0.13 -3.11 10.53 30.37 0.32 -2.79 15 16 C -0.15 -3.59 10.53 30.37 0.32 -3.27 15 17 C 0.04 1.38 6.71 83.97 0.56 1.94 15 18 H 0.05 2.22 8.14 -2.39 -0.02 2.20 15 19 H 0.04 1.77 7.54 -2.38 -0.02 1.75 15 20 H 0.03 1.60 7.78 -2.39 -0.02 1.58 15 21 H 0.26 16.02 6.43 -92.71 -0.60 15.42 15 22 H 0.07 2.84 8.14 -2.39 -0.02 2.82 15 23 H 0.04 1.91 7.63 -2.38 -0.02 1.90 15 24 H 0.11 2.33 8.14 -2.39 -0.02 2.31 15 25 H 0.10 2.34 8.14 -2.39 -0.02 2.32 15 26 H 0.10 2.27 8.14 -2.38 -0.02 2.25 15 27 H 0.11 2.26 8.14 -2.38 -0.02 2.24 15 28 H 0.05 2.04 7.82 -2.39 -0.02 2.02 15 29 H 0.09 2.89 8.14 -2.38 -0.02 2.87 15 Total: -1.00 -65.33 241.95 1.11 -64.22 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.28 Total: 6.77 kcal Atomic # 6 Polarization: -42.57 SS G_CDS: 3.02 Total: -39.55 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -5.24 Total: -84.92 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.05 Total: 53.48 kcal Total: -65.33 1.11 -64.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681183.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.254 kcal (2) G-P(sol) polarization free energy of solvation -65.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds