Wall clock time and date at job start Mon Mar 30 2020 02:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47101 * 2 1 4 4 C 1.46821 * 110.99825 * 293.95006 * 3 2 1 5 5 C 1.50216 * 110.20849 * 175.10183 * 4 3 2 6 6 C 1.34081 * 122.69948 * 342.74351 * 5 4 3 7 7 C 1.40075 * 118.82728 * 180.46943 * 6 5 4 8 8 H 1.07999 * 119.99828 * 17.15592 * 7 6 5 9 9 C 1.40310 * 120.00015 * 196.87780 * 7 6 5 10 10 N 1.30685 * 119.99968 * 15.67112 * 9 7 6 11 11 Si 1.86800 * 119.99990 * 195.66692 * 9 7 6 12 12 H 1.48498 * 109.47107 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47147 * 119.99908 * 11 9 7 14 14 H 1.48498 * 109.46815 * 240.00273 * 11 9 7 15 15 C 1.50372 * 122.34521 * 0.74887 * 6 5 4 16 16 C 1.47179 * 111.00416 * 57.08694 * 3 2 1 17 17 H 1.08996 * 109.46890 * 300.00485 * 1 2 3 18 18 H 1.09002 * 109.46555 * 60.00261 * 1 2 3 19 19 H 1.08994 * 109.47366 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47356 * 239.99490 * 2 1 3 21 21 H 1.09005 * 109.47051 * 119.99817 * 2 1 3 22 22 H 1.08999 * 109.34620 * 54.87458 * 4 3 2 23 23 H 1.09004 * 109.34937 * 295.32856 * 4 3 2 24 24 H 1.08002 * 118.65376 * 162.71992 * 5 4 3 25 25 H 0.96993 * 120.00380 * 180.02562 * 10 9 7 26 26 H 1.08998 * 109.43693 * 103.09615 * 15 6 5 27 27 H 1.09002 * 109.43790 * 222.96655 * 15 6 5 28 28 H 1.08998 * 109.60720 * 286.21390 * 16 3 2 29 29 H 1.09000 * 109.60932 * 46.55765 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6705 2.0665 -1.2527 5 6 2.0730 3.5122 -1.1866 6 6 2.3464 4.1359 -0.0316 7 6 2.7046 5.4897 -0.0634 8 1 2.4950 6.0832 -0.9410 9 6 3.3305 6.0760 1.0471 10 7 3.8542 5.3209 1.9763 11 14 3.4153 7.9361 1.1973 12 1 2.7528 8.5582 0.0229 13 1 2.7237 8.3644 2.4396 14 1 4.8363 8.3642 1.2490 15 6 2.2881 3.4323 1.2961 16 6 1.4917 2.1312 1.1535 17 1 -0.3633 0.5139 0.8899 18 1 -0.3632 0.5138 -0.8901 19 1 -0.3634 -1.0276 0.0005 20 1 1.8934 -0.5139 -0.8899 21 1 1.8934 -0.5138 0.8900 22 1 0.5945 1.9982 -1.4131 23 1 2.1883 1.5850 -2.0823 24 1 2.1456 4.0722 -2.1072 25 1 4.2865 5.7262 2.7441 26 1 3.3003 3.2070 1.6319 27 1 1.7992 4.0766 2.0269 28 1 0.4382 2.3588 0.9907 29 1 1.6011 1.5325 2.0577 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113175409.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:06 Heat of formation + Delta-G solvation = 6.626815 kcal Electronic energy + Delta-G solvation = -11089.545769 eV Core-core repulsion = 9205.332831 eV Total energy + Delta-G solvation = -1884.212938 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.06987 -34.67282 -31.97187 -29.37557 -28.95114 -25.84796 -23.05982 -22.11512 -20.30360 -17.52403 -15.77178 -15.18135 -14.78534 -14.21666 -13.68641 -13.24493 -12.69366 -12.29080 -11.92826 -11.69712 -11.31915 -11.25379 -10.86002 -10.78120 -10.39347 -10.34558 -10.08614 -9.44644 -9.04315 -8.86677 -7.51400 -7.22449 -6.50393 -4.15990 3.00489 3.15468 3.22114 3.96429 4.07171 4.86979 5.35268 5.44699 5.59540 5.79993 6.03143 6.15366 6.19934 6.34006 6.48329 6.51222 6.70154 6.77814 7.08973 7.20960 7.29900 7.36349 7.78828 7.90412 8.05440 8.20186 8.51827 8.74638 9.19704 9.41747 10.36563 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.087908 B = 0.010991 C = 0.010341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.438436 B = 2546.908018 C = 2706.994501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.048 3.952 3 N -0.529 5.529 4 C 0.136 3.864 5 C -0.417 4.417 6 C 0.095 3.905 7 C -0.472 4.472 8 H 0.070 0.930 9 C 0.075 3.925 10 N -0.811 5.811 11 Si 0.903 3.097 12 H -0.263 1.263 13 H -0.275 1.275 14 H -0.276 1.276 15 C -0.052 4.052 16 C 0.053 3.947 17 H 0.055 0.945 18 H 0.056 0.944 19 H 0.050 0.950 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.002 0.998 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.275 0.725 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.022 0.978 29 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.483 -4.524 0.679 5.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.081 4.081 3 N -0.252 5.252 4 C 0.009 3.991 5 C -0.438 4.438 6 C 0.093 3.907 7 C -0.503 4.503 8 H 0.088 0.912 9 C -0.140 4.140 10 N -0.438 5.438 11 Si 0.728 3.272 12 H -0.187 1.187 13 H -0.200 1.200 14 H -0.202 1.202 15 C -0.090 4.090 16 C -0.075 4.075 17 H 0.074 0.926 18 H 0.075 0.925 19 H 0.069 0.931 20 H 0.084 0.916 21 H 0.084 0.916 22 H 0.020 0.980 23 H 0.062 0.938 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.820 -4.515 0.941 5.406 hybrid contribution -0.833 0.925 0.012 1.246 sum -3.654 -3.590 0.953 5.210 Atomic orbital electron populations 1.22444 0.99184 1.01112 1.02219 1.22159 0.92274 0.92169 1.01519 1.62535 1.58119 1.00657 1.03927 1.20315 0.94892 0.94460 0.89406 1.21419 1.32255 0.93753 0.96418 1.18096 0.88403 0.92411 0.91782 1.19500 1.34880 0.95760 1.00119 0.91211 1.25981 0.93015 1.00082 0.94946 1.69810 1.27626 1.37004 1.09393 0.86355 0.78446 0.83379 0.79009 1.18671 1.20015 1.20207 1.20418 1.00429 0.91555 0.96549 1.22346 0.96455 0.96617 0.92038 0.92637 0.92477 0.93093 0.91637 0.91643 0.98024 0.93825 0.90666 0.91379 0.89330 0.92650 0.96013 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.90 9.22 37.16 0.34 -2.56 15 2 C 0.05 0.81 6.05 -3.82 -0.02 0.79 15 3 N -0.53 -11.39 4.90 -236.05 -1.16 -12.55 15 4 C 0.14 3.09 5.47 -5.25 -0.03 3.06 15 5 C -0.42 -11.05 9.70 -36.01 -0.35 -11.40 15 6 C 0.10 2.64 5.60 -105.56 -0.59 2.05 15 7 C -0.47 -13.27 8.90 -38.11 -0.34 -13.61 15 8 H 0.07 1.96 7.88 -52.49 -0.41 1.54 15 9 C 0.08 1.97 5.18 -17.26 -0.09 1.88 15 10 N -0.81 -21.37 10.38 55.57 0.58 -20.79 15 11 Si 0.90 19.57 29.59 -169.99 -5.03 14.54 15 12 H -0.26 -5.71 7.11 56.52 0.40 -5.30 15 13 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 14 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 15 C -0.05 -1.32 4.31 -27.93 -0.12 -1.44 15 16 C 0.05 1.16 4.63 -3.56 -0.02 1.15 15 17 H 0.05 0.87 6.68 -51.93 -0.35 0.52 15 18 H 0.06 0.91 6.45 -51.93 -0.33 0.58 15 19 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 20 H 0.07 1.04 8.12 -51.93 -0.42 0.62 15 21 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 22 H 0.00 0.05 6.24 -51.93 -0.32 -0.28 15 23 H 0.04 0.95 8.14 -51.93 -0.42 0.52 15 24 H 0.08 2.02 7.98 -52.49 -0.42 1.60 15 25 H 0.28 6.62 8.29 -40.82 -0.34 6.28 15 26 H 0.09 2.40 7.02 -51.93 -0.36 2.04 15 27 H 0.06 1.42 7.57 -51.93 -0.39 1.03 15 28 H 0.02 0.47 7.03 -51.93 -0.37 0.11 15 29 H 0.05 1.04 8.04 -51.93 -0.42 0.62 15 LS Contribution 230.98 15.07 3.48 3.48 Total: -1.00 -28.05 230.98 -7.55 -35.60 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.20 Total: -0.19 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -1.22 Total: -20.09 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: -0.58 Total: -33.34 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.05 -7.55 -35.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113175409.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.228 kcal (2) G-P(sol) polarization free energy of solvation -28.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds