Wall clock time and date at job start Mon Mar 30 2020 02:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47101 * 2 1 4 4 C 1.46821 * 110.99825 * 293.95006 * 3 2 1 5 5 C 1.50216 * 110.20849 * 175.10183 * 4 3 2 6 6 C 1.34081 * 122.69948 * 342.74351 * 5 4 3 7 7 C 1.40075 * 118.82728 * 180.46943 * 6 5 4 8 8 H 1.07999 * 119.99828 * 17.15592 * 7 6 5 9 9 C 1.40310 * 120.00015 * 196.87780 * 7 6 5 10 10 N 1.30685 * 119.99968 * 15.67112 * 9 7 6 11 11 Si 1.86800 * 119.99990 * 195.66692 * 9 7 6 12 12 H 1.48498 * 109.47107 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47147 * 119.99908 * 11 9 7 14 14 H 1.48498 * 109.46815 * 240.00273 * 11 9 7 15 15 C 1.50372 * 122.34521 * 0.74887 * 6 5 4 16 16 C 1.47179 * 111.00416 * 57.08694 * 3 2 1 17 17 H 1.08996 * 109.46890 * 300.00485 * 1 2 3 18 18 H 1.09002 * 109.46555 * 60.00261 * 1 2 3 19 19 H 1.08994 * 109.47366 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47356 * 239.99490 * 2 1 3 21 21 H 1.09005 * 109.47051 * 119.99817 * 2 1 3 22 22 H 1.08999 * 109.34620 * 54.87458 * 4 3 2 23 23 H 1.09004 * 109.34937 * 295.32856 * 4 3 2 24 24 H 1.08002 * 118.65376 * 162.71992 * 5 4 3 25 25 H 0.96993 * 120.00380 * 180.02562 * 10 9 7 26 26 H 1.08998 * 109.43693 * 103.09615 * 15 6 5 27 27 H 1.09002 * 109.43790 * 222.96655 * 15 6 5 28 28 H 1.08998 * 109.60720 * 286.21390 * 16 3 2 29 29 H 1.09000 * 109.60932 * 46.55765 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6705 2.0665 -1.2527 5 6 2.0730 3.5122 -1.1866 6 6 2.3464 4.1359 -0.0316 7 6 2.7046 5.4897 -0.0634 8 1 2.4950 6.0832 -0.9410 9 6 3.3305 6.0760 1.0471 10 7 3.8542 5.3209 1.9763 11 14 3.4153 7.9361 1.1973 12 1 2.7528 8.5582 0.0229 13 1 2.7237 8.3644 2.4396 14 1 4.8363 8.3642 1.2490 15 6 2.2881 3.4323 1.2961 16 6 1.4917 2.1312 1.1535 17 1 -0.3633 0.5139 0.8899 18 1 -0.3632 0.5138 -0.8901 19 1 -0.3634 -1.0276 0.0005 20 1 1.8934 -0.5139 -0.8899 21 1 1.8934 -0.5138 0.8900 22 1 0.5945 1.9982 -1.4131 23 1 2.1883 1.5850 -2.0823 24 1 2.1456 4.0722 -2.1072 25 1 4.2865 5.7262 2.7441 26 1 3.3003 3.2070 1.6319 27 1 1.7992 4.0766 2.0269 28 1 0.4382 2.3588 0.9907 29 1 1.6011 1.5325 2.0577 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113175409.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:06 Heat of formation + Delta-G solvation = -11.082529 kcal Electronic energy + Delta-G solvation = -11090.313703 eV Core-core repulsion = 9205.332831 eV Total energy + Delta-G solvation = -1884.980873 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.80475 -36.56592 -33.82322 -31.24498 -30.60381 -27.67857 -24.76118 -24.00146 -21.93059 -19.50592 -17.74993 -17.05075 -16.42345 -15.82872 -15.40420 -14.79645 -14.50269 -13.93697 -13.78727 -13.33916 -13.09129 -12.79927 -12.62369 -12.47777 -12.09728 -12.03156 -11.78767 -11.34505 -11.01441 -10.83821 -9.45221 -9.01162 -8.49181 -6.28204 1.25288 1.37979 1.52295 1.97768 2.24540 3.25305 3.28384 4.15979 4.26319 4.35448 4.54983 4.61651 4.72397 4.75442 4.79292 5.00742 5.07714 5.11944 5.28052 5.31402 5.35402 5.35568 5.74845 5.93121 6.25674 6.35667 6.53503 6.67702 7.12122 7.34413 8.38581 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.087908 B = 0.010991 C = 0.010341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.438436 B = 2546.908018 C = 2706.994501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.046 3.954 3 N -0.547 5.547 4 C 0.142 3.858 5 C -0.431 4.431 6 C 0.065 3.935 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.038 3.962 10 N -0.829 5.829 11 Si 0.978 3.022 12 H -0.267 1.267 13 H -0.260 1.260 14 H -0.265 1.265 15 C -0.040 4.040 16 C 0.062 3.938 17 H 0.049 0.951 18 H 0.045 0.955 19 H 0.081 0.919 20 H 0.078 0.922 21 H 0.082 0.918 22 H 0.012 0.988 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.287 0.713 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.022 0.978 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 -5.056 1.419 6.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.082 4.082 3 N -0.272 5.272 4 C 0.015 3.985 5 C -0.452 4.452 6 C 0.063 3.937 7 C -0.546 4.546 8 H 0.073 0.927 9 C -0.177 4.177 10 N -0.456 5.456 11 Si 0.799 3.201 12 H -0.191 1.191 13 H -0.184 1.184 14 H -0.190 1.190 15 C -0.078 4.078 16 C -0.066 4.066 17 H 0.068 0.932 18 H 0.064 0.936 19 H 0.100 0.900 20 H 0.096 0.904 21 H 0.100 0.900 22 H 0.030 0.970 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.135 -5.081 1.682 6.202 hybrid contribution -0.700 1.048 -0.240 1.283 sum -3.835 -4.032 1.442 5.749 Atomic orbital electron populations 1.22362 0.97656 1.02881 1.01365 1.22289 0.93578 0.89307 1.03037 1.62439 1.59189 1.02622 1.02910 1.20188 0.95440 0.92255 0.90626 1.21700 1.32104 0.96020 0.95412 1.18517 0.88993 0.92949 0.93203 1.19711 1.37194 0.96589 1.01059 0.92678 1.26769 0.91841 1.05124 0.93939 1.69850 1.26933 1.39143 1.09676 0.85229 0.78938 0.76738 0.79161 1.19116 1.18422 1.18995 1.20213 0.99629 0.93099 0.94852 1.22204 0.95635 0.95324 0.93412 0.93192 0.93591 0.90018 0.90370 0.89962 0.97003 0.92874 0.92516 0.90236 0.91479 0.93927 0.95943 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.03 9.22 71.98 0.66 -4.37 15 2 C 0.05 1.41 6.05 86.30 0.52 1.93 15 3 N -0.55 -22.76 4.90 -900.73 -4.42 -27.18 15 4 C 0.14 6.37 5.47 85.42 0.47 6.83 15 5 C -0.43 -23.38 9.70 24.59 0.24 -23.15 15 6 C 0.07 3.72 5.60 -20.47 -0.11 3.61 15 7 C -0.52 -29.89 8.90 23.22 0.21 -29.68 15 8 H 0.05 3.23 7.88 -2.91 -0.02 3.21 15 9 C 0.04 1.98 5.18 85.37 0.44 2.42 15 10 N -0.83 -43.82 10.38 21.89 0.23 -43.59 15 11 Si 0.98 40.04 29.59 68.60 2.03 42.07 15 12 H -0.27 -11.02 7.11 99.48 0.71 -10.32 15 13 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 14 H -0.27 -10.34 7.11 99.48 0.71 -9.63 15 15 C -0.04 -2.07 4.31 29.82 0.13 -1.94 15 16 C 0.06 2.64 4.63 86.32 0.40 3.04 15 17 H 0.05 1.42 6.68 -2.39 -0.02 1.40 15 18 H 0.05 1.35 6.45 -2.39 -0.02 1.34 15 19 H 0.08 1.74 8.14 -2.39 -0.02 1.72 15 20 H 0.08 2.23 8.12 -2.39 -0.02 2.21 15 21 H 0.08 2.29 8.14 -2.38 -0.02 2.27 15 22 H 0.01 0.52 6.24 -2.39 -0.01 0.51 15 23 H 0.05 2.25 8.14 -2.39 -0.02 2.24 15 24 H 0.06 3.18 7.98 -2.91 -0.02 3.16 15 25 H 0.29 13.60 8.29 -92.71 -0.77 12.84 15 26 H 0.07 3.70 7.02 -2.39 -0.02 3.68 15 27 H 0.04 2.22 7.57 -2.39 -0.02 2.21 15 28 H 0.02 0.95 7.03 -2.39 -0.02 0.93 15 29 H 0.08 2.90 8.04 -2.39 -0.02 2.88 15 Total: -1.00 -60.55 230.98 1.91 -58.64 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.11 Total: 11.35 kcal Atomic # 6 Polarization: -44.25 SS G_CDS: 2.95 Total: -41.29 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: -4.19 Total: -70.77 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -60.55 1.91 -58.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113175409.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.558 kcal (2) G-P(sol) polarization free energy of solvation -60.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds