Wall clock time and date at job start Mon Mar 30 2020 02:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30690 * 1 3 3 Si 1.86800 * 120.00343 * 2 1 4 4 H 1.48492 * 109.46889 * 269.99858 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.99709 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.99745 * 3 2 1 7 7 C 1.40059 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.41565 * 119.99841 * 0.02562 * 7 2 1 10 10 N 1.33434 * 119.22569 * 359.72514 * 9 7 2 11 11 C 1.32502 * 120.73756 * 179.71642 * 10 9 7 12 12 O 1.35532 * 120.39979 * 180.28021 * 11 10 9 13 13 C 1.39517 * 119.20328 * 0.54705 * 11 10 9 14 14 C 1.39521 * 118.56916 * 359.73111 * 13 11 10 15 15 O 1.35531 * 120.40447 * 180.02562 * 14 13 11 16 16 N 1.32503 * 119.19733 * 359.97438 * 14 13 11 17 17 H 0.97005 * 119.99927 * 0.02562 * 1 2 3 18 18 H 0.96698 * 114.00040 * 270.27750 * 12 11 10 19 19 H 1.07991 * 120.71950 * 179.70735 * 13 11 10 20 20 H 0.96695 * 113.99810 * 269.98074 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.4885 2.0463 -1.4000 5 1 1.4385 2.6527 0.7000 6 1 3.5385 1.4401 0.7001 7 6 2.0072 -1.2129 0.0005 8 1 3.0872 -1.2130 0.0001 9 6 1.2993 -2.4389 0.0005 10 7 -0.0349 -2.4209 0.0056 11 6 -0.7275 -3.5504 0.0001 12 8 -2.0825 -3.5241 -0.0004 13 6 -0.0451 -4.7673 0.0006 14 6 1.3500 -4.7500 0.0010 15 8 2.0504 -5.9103 0.0009 16 7 1.9819 -3.5854 0.0005 17 1 -0.4850 0.8401 -0.0004 18 1 -2.4761 -3.5162 0.8828 19 1 -0.5850 -5.7026 0.0009 20 1 2.2536 -6.2471 0.8843 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118076159.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:47 Heat of formation + Delta-G solvation = -35.045231 kcal Electronic energy + Delta-G solvation = -10527.908175 eV Core-core repulsion = 8304.796101 eV Total energy + Delta-G solvation = -2223.112073 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.33277 -36.98726 -35.97068 -33.53861 -30.73083 -29.70235 -26.45259 -22.36011 -21.98457 -18.90799 -17.23746 -16.65629 -16.06593 -15.12750 -14.75370 -13.97749 -13.49567 -13.19937 -12.22195 -11.69495 -11.32178 -11.23943 -10.98587 -10.42916 -10.36760 -9.49089 -8.93689 -8.80441 -8.05630 -7.57154 -6.64558 -4.87475 2.39104 2.57413 3.01504 3.03988 3.07452 3.81661 4.33260 4.66094 4.96033 5.68307 6.16780 6.42231 6.45794 6.86479 6.94504 7.15714 7.99965 8.09151 8.30979 8.45397 8.69424 8.89680 9.99045 10.14155 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.053734 B = 0.014765 C = 0.011654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.961065 B = 1895.909284 C = 2401.952287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.703 5.703 2 C 0.063 3.937 3 Si 0.923 3.077 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.390 4.390 8 H 0.098 0.902 9 C 0.420 3.580 10 N -0.526 5.526 11 C 0.368 3.632 12 O -0.491 6.491 13 C -0.400 4.400 14 C 0.373 3.627 15 O -0.494 6.494 16 N -0.613 5.613 17 H 0.278 0.722 18 H 0.388 0.612 19 H 0.115 0.885 20 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.417 -1.362 3.333 3.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.324 5.324 2 C -0.165 4.165 3 Si 0.746 3.254 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.425 4.425 8 H 0.116 0.884 9 C 0.184 3.816 10 N -0.255 5.255 11 C 0.173 3.827 12 O -0.297 6.297 13 C -0.431 4.431 14 C 0.180 3.820 15 O -0.299 6.299 16 N -0.344 5.344 17 H 0.089 0.911 18 H 0.244 0.756 19 H 0.133 0.867 20 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.112 -0.314 2.117 2.143 hybrid contribution -0.331 -0.361 0.904 1.028 sum -0.443 -0.675 3.021 3.127 Atomic orbital electron populations 1.70154 1.07366 1.28524 1.26312 1.26175 0.95105 1.01620 0.93625 0.86061 0.80292 0.79484 0.79520 1.19100 1.19896 1.18163 1.19445 0.94959 0.87263 1.40838 0.88358 1.19474 0.83989 0.89833 0.88288 1.68914 1.08679 1.26991 1.20867 1.19477 0.83715 0.88496 0.90998 1.84637 1.15927 1.96198 1.32888 1.22012 0.94406 0.98675 1.27975 1.19087 0.86454 0.85023 0.91389 1.84649 1.76430 1.35827 1.33020 1.68218 1.42064 0.98025 1.26113 0.91070 0.75628 0.86731 0.75573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.39 11.42 55.55 0.63 -17.76 14 2 C 0.06 1.57 5.50 -17.35 -0.10 1.47 14 3 Si 0.92 18.13 29.56 -169.99 -5.02 13.10 14 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 14 5 H -0.27 -5.19 7.11 56.52 0.40 -4.79 14 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 14 7 C -0.39 -10.62 9.37 -37.63 -0.35 -10.97 14 8 H 0.10 2.54 7.85 -52.49 -0.41 2.13 14 9 C 0.42 12.02 7.37 -158.36 -1.17 10.86 14 10 N -0.53 -14.87 7.89 -12.77 -0.10 -14.97 14 11 C 0.37 9.28 7.82 -16.79 -0.13 9.14 14 12 O -0.49 -10.60 13.57 -18.29 -0.25 -10.85 14 13 C -0.40 -9.44 10.10 -38.63 -0.39 -9.84 14 14 C 0.37 9.11 7.83 -16.78 -0.13 8.98 14 15 O -0.49 -10.00 13.57 -18.29 -0.25 -10.25 14 16 N -0.61 -16.76 10.38 -12.77 -0.13 -16.89 14 17 H 0.28 6.50 8.29 -40.82 -0.34 6.17 14 18 H 0.39 6.13 9.06 45.56 0.41 6.55 14 19 H 0.11 2.39 8.06 -52.49 -0.42 1.97 14 20 H 0.39 5.54 9.06 45.56 0.41 5.96 14 LS Contribution 198.02 15.07 2.98 2.98 Total: -1.00 -32.80 198.02 -3.55 -36.34 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.86 Total: 8.64 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: -2.27 Total: 9.64 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.40 Total: -49.62 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.50 Total: -21.10 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.02 Total: 13.10 kcal Total LS contribution 2.98 Total: 2.98 kcal Total: -32.80 -3.55 -36.34 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118076159.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.299 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds