Wall clock time and date at job start Mon Mar 30 2020 02:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 5 5 H 1.08004 * 120.00412 * 119.99885 * 4 2 1 6 6 C 1.37879 * 120.00142 * 300.00195 * 4 2 1 7 7 N 1.31514 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00298 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46970 * 59.99698 * 8 6 4 10 10 H 1.48495 * 109.47163 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47139 * 300.00207 * 8 6 4 12 12 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 13 13 C 1.46905 * 110.99870 * 84.99904 * 12 2 1 14 14 C 1.54633 * 111.03829 * 270.33468 * 13 12 2 15 15 C 1.51166 * 104.69492 * 217.36157 * 14 13 12 16 16 C 1.30526 * 111.12004 * 16.38390 * 15 14 13 17 17 C 1.51102 * 111.10222 * 0.03198 * 16 15 14 18 18 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 19 19 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 20 20 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 21 21 H 0.97004 * 120.00312 * 179.97438 * 7 6 4 22 22 H 1.00901 * 111.00067 * 208.95080 * 12 2 1 23 23 H 1.09000 * 110.91523 * 34.30117 * 13 12 2 24 24 H 1.09001 * 110.38671 * 336.14917 * 14 13 12 25 25 H 1.08996 * 110.38800 * 98.52253 * 14 13 12 26 26 H 1.07997 * 124.43146 * 196.42915 * 15 14 13 27 27 H 1.08000 * 124.44969 * 180.02562 * 16 15 14 28 28 H 1.09004 * 110.38596 * 224.75416 * 17 16 15 29 29 H 1.08998 * 110.48679 * 102.42789 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.8064 -1.1210 4.0081 10 1 1.8259 -0.4208 5.2204 11 1 1.8258 -2.5204 4.0077 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 0.7478 0.2262 -3.1278 15 6 1.1532 0.3403 -4.5796 16 6 2.4167 0.0538 -4.7390 17 6 3.0648 -0.3000 -3.4207 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 0.7088 1.1613 3.4845 22 1 2.9173 -1.1204 -1.0288 23 1 2.3514 1.2295 -2.0274 24 1 0.2055 -0.7038 -2.9571 25 1 0.1386 1.0812 -2.8347 26 1 0.4852 0.6227 -5.3798 27 1 2.9312 0.0677 -5.6884 28 1 4.0300 0.1975 -3.3265 29 1 3.1847 -1.3797 -3.3322 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131042574.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:22 Heat of formation + Delta-G solvation = 11.956331 kcal Electronic energy + Delta-G solvation = -10886.143508 eV Core-core repulsion = 9002.161675 eV Total energy + Delta-G solvation = -1883.981833 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.39031 -34.88206 -32.10496 -28.89951 -27.69579 -26.02336 -24.86645 -20.16784 -19.58511 -18.43974 -16.41796 -15.58676 -14.99472 -14.56878 -13.58168 -12.87395 -12.23617 -12.04275 -11.81660 -11.66824 -11.24686 -10.90394 -10.74153 -10.65751 -10.54880 -10.20542 -10.04043 -9.75522 -8.80289 -8.55544 -8.42376 -7.27272 -6.00224 -4.06883 2.55112 3.32336 3.36691 3.39508 4.41737 5.05335 5.10867 5.26913 5.33686 5.63814 5.65752 6.08986 6.18442 6.27891 6.39793 6.44404 6.66199 6.82279 6.96264 7.20449 7.22047 7.29138 7.56772 7.80738 7.93956 8.30959 8.43972 8.71577 9.04231 9.58967 11.05940 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.084871 B = 0.009806 C = 0.009134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.834497 B = 2854.681276 C = 3064.814949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.211 3.789 3 H 0.001 0.999 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.680 5.680 13 C 0.083 3.917 14 C -0.090 4.090 15 C -0.163 4.163 16 C -0.175 4.175 17 C -0.103 4.103 18 H 0.078 0.922 19 H 0.009 0.991 20 H 0.029 0.971 21 H 0.261 0.739 22 H 0.332 0.668 23 H 0.046 0.954 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.061 0.939 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.690 -0.648 -9.441 9.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 H 0.018 0.982 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.311 5.311 13 C -0.028 4.028 14 C -0.128 4.128 15 C -0.181 4.181 16 C -0.193 4.193 17 C -0.140 4.140 18 H 0.097 0.903 19 H 0.028 0.972 20 H 0.049 0.951 21 H 0.071 0.929 22 H 0.150 0.850 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.081 0.919 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.080 0.920 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.986 -0.773 -9.431 9.514 hybrid contribution 1.018 0.144 1.013 1.443 sum 2.004 -0.630 -8.418 8.676 Atomic orbital electron populations 1.21760 0.97881 0.99255 0.99526 1.19157 0.92736 0.92185 0.85554 0.98177 1.21254 1.31494 1.12517 0.90572 0.92312 1.24921 0.95058 0.94997 0.99021 1.69894 1.36620 1.22877 1.23515 0.86584 0.79050 0.79789 0.82094 1.20346 1.21324 1.20204 1.60783 1.31847 1.32625 1.05892 1.22360 0.93781 0.95126 0.91489 1.21495 0.98342 1.02243 0.90700 1.23409 0.96632 0.99956 0.98123 1.23156 0.96434 1.01639 0.98072 1.21552 0.98398 1.01479 0.92567 0.90321 0.97210 0.95135 0.92903 0.85017 0.93658 0.89683 0.91904 0.86586 0.86609 0.92007 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.02 37.15 0.34 -2.85 15 2 C 0.21 5.45 2.60 -68.87 -0.18 5.27 15 3 H 0.00 0.02 7.47 -51.93 -0.39 -0.37 15 4 C -0.52 -14.46 8.59 -34.44 -0.30 -14.75 15 5 H 0.06 1.60 7.62 -52.48 -0.40 1.20 15 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 15 7 N -0.89 -25.76 11.32 55.43 0.63 -25.13 15 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 15 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 12 N -0.68 -14.85 6.13 -99.16 -0.61 -15.46 15 13 C 0.08 1.57 3.43 -65.99 -0.23 1.35 15 14 C -0.09 -1.57 5.15 -26.80 -0.14 -1.70 15 15 C -0.16 -2.36 10.78 -35.67 -0.38 -2.75 15 16 C -0.17 -2.44 10.78 -35.70 -0.38 -2.83 15 17 C -0.10 -1.59 6.30 -26.83 -0.17 -1.76 15 18 H 0.08 2.17 6.07 -51.93 -0.32 1.85 15 19 H 0.01 0.21 6.14 -51.93 -0.32 -0.11 15 20 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 22 H 0.33 7.03 7.95 -39.29 -0.31 6.72 15 23 H 0.05 0.92 7.50 -51.93 -0.39 0.53 15 24 H 0.08 1.57 8.08 -51.93 -0.42 1.15 15 25 H 0.06 1.10 7.46 -51.93 -0.39 0.72 15 26 H 0.12 1.41 8.06 -52.49 -0.42 0.99 15 27 H 0.12 1.34 8.06 -52.49 -0.42 0.91 15 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 29 H 0.08 1.24 8.05 -51.93 -0.42 0.82 15 LS Contribution 237.31 15.07 3.58 3.58 Total: -1.00 -28.49 237.31 -7.14 -35.63 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.17 Total: 3.37 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -1.54 Total: -18.40 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.02 Total: -40.59 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.49 -7.14 -35.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131042574.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.583 kcal (2) G-P(sol) polarization free energy of solvation -28.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds