Wall clock time and date at job start Mon Mar 30 2020 02:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 5 5 H 1.08004 * 120.00412 * 119.99885 * 4 2 1 6 6 C 1.37879 * 120.00142 * 300.00195 * 4 2 1 7 7 N 1.31514 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00298 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46970 * 59.99698 * 8 6 4 10 10 H 1.48495 * 109.47163 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47139 * 300.00207 * 8 6 4 12 12 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 13 13 C 1.46905 * 110.99870 * 84.99904 * 12 2 1 14 14 C 1.54633 * 111.03829 * 270.33468 * 13 12 2 15 15 C 1.51166 * 104.69492 * 217.36157 * 14 13 12 16 16 C 1.30526 * 111.12004 * 16.38390 * 15 14 13 17 17 C 1.51102 * 111.10222 * 0.03198 * 16 15 14 18 18 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 19 19 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 20 20 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 21 21 H 0.97004 * 120.00312 * 179.97438 * 7 6 4 22 22 H 1.00901 * 111.00067 * 208.95080 * 12 2 1 23 23 H 1.09000 * 110.91523 * 34.30117 * 13 12 2 24 24 H 1.09001 * 110.38671 * 336.14917 * 14 13 12 25 25 H 1.08996 * 110.38800 * 98.52253 * 14 13 12 26 26 H 1.07997 * 124.43146 * 196.42915 * 15 14 13 27 27 H 1.08000 * 124.44969 * 180.02562 * 16 15 14 28 28 H 1.09004 * 110.38596 * 224.75416 * 17 16 15 29 29 H 1.08998 * 110.48679 * 102.42789 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.8064 -1.1210 4.0081 10 1 1.8259 -0.4208 5.2204 11 1 1.8258 -2.5204 4.0077 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 0.7478 0.2262 -3.1278 15 6 1.1532 0.3403 -4.5796 16 6 2.4167 0.0538 -4.7390 17 6 3.0648 -0.3000 -3.4207 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 0.7088 1.1613 3.4845 22 1 2.9173 -1.1204 -1.0288 23 1 2.3514 1.2295 -2.0274 24 1 0.2055 -0.7038 -2.9571 25 1 0.1386 1.0812 -2.8347 26 1 0.4852 0.6227 -5.3798 27 1 2.9312 0.0677 -5.6884 28 1 4.0300 0.1975 -3.3265 29 1 3.1847 -1.3797 -3.3322 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131042574.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:22 Heat of formation + Delta-G solvation = -6.055538 kcal Electronic energy + Delta-G solvation = -10886.924561 eV Core-core repulsion = 9002.161675 eV Total energy + Delta-G solvation = -1884.762886 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.79897 -36.73231 -34.06832 -30.69120 -29.04846 -27.70510 -26.87539 -22.07286 -21.19783 -19.64733 -18.42336 -16.97314 -16.74520 -16.32450 -15.46281 -14.77309 -13.74503 -13.59282 -13.50607 -13.15029 -12.89408 -12.76860 -12.57202 -12.31896 -12.11441 -12.08023 -11.90667 -11.51244 -10.88236 -10.56492 -9.73514 -9.10769 -8.13704 -6.28772 1.42159 1.43719 1.44568 1.52184 2.41215 3.14346 3.60106 3.78286 3.90930 4.28002 4.43646 4.77339 4.83937 4.87025 4.92417 5.02506 5.09825 5.16239 5.20541 5.24789 5.50733 5.63069 5.68317 5.86817 6.10821 6.21901 6.48228 6.78492 7.00263 7.41935 8.91813 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.084871 B = 0.009806 C = 0.009134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.834497 B = 2854.681276 C = 3064.814949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.216 3.784 3 H -0.034 1.034 4 C -0.542 4.542 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.676 5.676 13 C 0.072 3.928 14 C -0.091 4.091 15 C -0.169 4.169 16 C -0.163 4.163 17 C -0.099 4.099 18 H 0.054 0.946 19 H 0.027 0.973 20 H 0.025 0.975 21 H 0.263 0.737 22 H 0.334 0.666 23 H 0.025 0.975 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.145 0.855 27 H 0.151 0.849 28 H 0.074 0.926 29 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.402 -1.382 -10.495 10.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 H -0.017 1.017 4 C -0.580 4.580 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.307 5.307 13 C -0.039 4.039 14 C -0.128 4.128 15 C -0.187 4.187 16 C -0.181 4.181 17 C -0.136 4.136 18 H 0.073 0.927 19 H 0.046 0.954 20 H 0.045 0.955 21 H 0.072 0.928 22 H 0.152 0.848 23 H 0.043 0.957 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.163 0.837 27 H 0.169 0.831 28 H 0.092 0.908 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.702 -1.513 -10.507 10.751 hybrid contribution 0.803 0.401 1.315 1.592 sum 2.506 -1.111 -9.192 9.592 Atomic orbital electron populations 1.21578 0.97694 0.98723 0.99177 1.18956 0.92884 0.90462 0.86934 1.01701 1.21599 1.31891 1.12820 0.91697 0.92152 1.25775 0.95115 0.95669 1.02159 1.70031 1.37428 1.24097 1.24260 0.85502 0.78755 0.78614 0.78077 1.19457 1.20919 1.19591 1.60719 1.32006 1.32796 1.05214 1.22478 0.96293 0.93692 0.91428 1.21424 0.97175 1.01201 0.93034 1.23448 0.97507 1.01037 0.96686 1.23362 0.96089 1.00328 0.98366 1.21517 0.98117 1.01663 0.92323 0.92743 0.95439 0.95532 0.92816 0.84787 0.95690 0.91008 0.92863 0.83733 0.83130 0.90788 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.86 9.02 71.98 0.65 -5.21 15 2 C 0.22 11.43 2.60 44.16 0.11 11.55 15 3 H -0.03 -2.03 7.47 -2.39 -0.02 -2.05 15 4 C -0.54 -30.46 8.59 25.60 0.22 -30.24 15 5 H 0.06 3.29 7.62 -2.91 -0.02 3.27 15 6 C 0.01 0.67 5.30 84.66 0.45 1.12 15 7 N -0.92 -54.01 11.32 21.45 0.24 -53.77 15 8 Si 0.97 43.91 29.54 68.60 2.03 45.94 15 9 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 11 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 12 N -0.68 -29.76 6.13 -467.64 -2.87 -32.63 15 13 C 0.07 2.69 3.43 46.03 0.16 2.85 15 14 C -0.09 -3.09 5.15 30.55 0.16 -2.93 15 15 C -0.17 -4.44 10.78 26.28 0.28 -4.16 15 16 C -0.16 -4.01 10.78 26.26 0.28 -3.73 15 17 C -0.10 -2.88 6.30 30.53 0.19 -2.68 15 18 H 0.05 3.07 6.07 -2.38 -0.01 3.06 15 19 H 0.03 1.26 6.14 -2.39 -0.01 1.25 15 20 H 0.03 1.33 8.14 -2.39 -0.02 1.32 15 21 H 0.26 14.64 8.31 -92.71 -0.77 13.87 15 22 H 0.33 14.19 7.95 -89.69 -0.71 13.47 15 23 H 0.03 1.04 7.50 -2.39 -0.02 1.03 15 24 H 0.07 2.62 8.08 -2.39 -0.02 2.60 15 25 H 0.05 1.87 7.46 -2.39 -0.02 1.85 15 26 H 0.15 2.99 8.06 -2.91 -0.02 2.97 15 27 H 0.15 2.73 8.06 -2.91 -0.02 2.71 15 28 H 0.07 1.97 8.14 -2.39 -0.02 1.96 15 29 H 0.08 2.40 8.05 -2.39 -0.02 2.38 15 Total: -1.00 -60.89 237.31 2.32 -58.57 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.41 Total: 15.32 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 2.51 Total: -33.44 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -2.63 Total: -86.40 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -60.89 2.32 -58.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131042574.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.519 kcal (2) G-P(sol) polarization free energy of solvation -60.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds