Wall clock time and date at job start Mon Mar 30 2020 02:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 C 1.36811 * 122.89579 * 264.70872 * 3 2 1 5 5 C 1.34537 * 115.33884 * 179.76676 * 4 3 2 6 6 S 1.75799 * 110.14715 * 0.47775 * 5 4 3 7 7 C 1.38283 * 122.90608 * 84.99668 * 3 2 1 8 8 C 1.39914 * 125.40356 * 0.03686 * 7 3 2 9 9 H 1.07999 * 120.00461 * 359.97438 * 8 7 3 10 10 C 1.40072 * 119.99871 * 180.02562 * 8 7 3 11 11 N 1.30865 * 120.00005 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99926 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.47076 * 89.99916 * 12 10 8 14 14 H 1.48505 * 109.47074 * 209.99814 * 12 10 8 15 15 H 1.48497 * 109.47068 * 329.99684 * 12 10 8 16 16 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 17 17 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 18 18 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 19 19 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 20 20 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 21 21 H 1.07995 * 122.32929 * 359.97438 * 4 3 2 22 22 H 1.08003 * 124.92768 * 180.21607 * 5 4 3 23 23 H 0.97002 * 120.00164 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3800 2.0860 -1.1439 5 6 2.8045 3.3505 -0.9681 6 16 2.7913 3.7617 0.7410 7 6 2.1874 2.1628 1.1565 8 6 1.9088 1.7128 2.4517 9 1 1.5399 0.7098 2.6073 10 6 2.1073 2.5637 3.5466 11 7 2.5538 3.7792 3.3581 12 14 1.7360 1.9627 5.2759 13 1 2.9533 1.3401 5.8556 14 1 1.3174 3.1107 6.1197 15 1 0.6423 0.9594 5.2271 16 1 -0.3633 0.5138 -0.8900 17 1 -0.3633 -1.0276 0.0005 18 1 -0.3633 0.5139 0.8900 19 1 1.8934 -0.5137 0.8901 20 1 1.8934 -0.5139 -0.8900 21 1 2.3148 1.6290 -2.1202 22 1 3.1131 4.0150 -1.7616 23 1 2.6909 4.3686 4.1162 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142918526.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:58 Heat of formation + Delta-G solvation = -7.313599 kcal Electronic energy + Delta-G solvation = -8884.060631 eV Core-core repulsion = 7208.444306 eV Total energy + Delta-G solvation = -1675.616325 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 182.046 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -36.53346 -33.81988 -31.28144 -28.74037 -24.93565 -22.67252 -20.61100 -18.16828 -16.86953 -15.07912 -14.65359 -13.84346 -12.87012 -12.49464 -12.40873 -11.85878 -11.67493 -11.31872 -11.11291 -10.52851 -10.42215 -10.30793 -9.78152 -9.55422 -9.45794 -8.73875 -7.31680 -6.91408 -6.55073 -4.41184 2.68151 2.96692 3.01731 3.17809 3.74222 3.78981 4.20568 4.24433 5.08866 6.11641 6.18434 6.50013 6.67068 6.75081 6.88279 6.93010 7.00097 7.21866 7.30984 7.73120 7.92467 8.16506 8.26737 8.66966 8.71160 9.92894 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.041498 B = 0.018852 C = 0.013471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.576364 B = 1484.866766 C = 2078.078882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.022 4.022 3 C -0.326 4.326 4 C -0.064 4.064 5 C -0.416 4.416 6 S 0.115 5.885 7 C 0.044 3.956 8 C -0.388 4.388 9 H 0.094 0.906 10 C 0.051 3.949 11 N -0.786 5.786 12 Si 0.931 3.069 13 H -0.266 1.266 14 H -0.274 1.274 15 H -0.259 1.259 16 H 0.042 0.958 17 H 0.032 0.968 18 H 0.053 0.947 19 H 0.048 0.952 20 H 0.037 0.963 21 H 0.088 0.912 22 H 0.115 0.885 23 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 -2.214 1.188 2.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.333 4.333 4 C -0.094 4.094 5 C -0.551 4.551 6 S 0.375 5.625 7 C -0.076 4.076 8 C -0.424 4.424 9 H 0.112 0.888 10 C -0.169 4.169 11 N -0.414 5.414 12 Si 0.754 3.246 13 H -0.191 1.191 14 H -0.199 1.199 15 H -0.183 1.183 16 H 0.061 0.939 17 H 0.051 0.949 18 H 0.073 0.927 19 H 0.067 0.933 20 H 0.056 0.944 21 H 0.106 0.894 22 H 0.133 0.867 23 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.960 -0.696 2.026 2.348 hybrid contribution -0.475 -1.352 -0.218 1.449 sum -1.435 -2.048 1.808 3.086 Atomic orbital electron populations 1.21754 0.97737 0.98803 1.01483 1.19557 0.93667 0.93830 0.99087 1.18404 1.24796 0.98247 0.91853 1.19166 0.99771 0.93867 0.96572 1.25336 1.25665 1.01706 1.02381 1.84409 1.67452 1.15464 0.95204 1.21639 0.96020 0.94318 0.95638 1.19137 1.34141 0.99959 0.89163 0.88842 1.26183 0.93479 0.94311 1.02902 1.68903 1.31884 1.06197 1.34407 0.85897 0.79878 0.79351 0.79433 1.19133 1.19904 1.18275 0.93906 0.94901 0.92742 0.93344 0.94449 0.89417 0.86684 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.90 37.16 0.37 -2.39 14 2 C -0.02 -0.48 5.80 -27.88 -0.16 -0.64 14 3 C -0.33 -8.34 5.17 -105.12 -0.54 -8.88 14 4 C -0.06 -1.61 9.92 -41.41 -0.41 -2.02 14 5 C -0.42 -10.54 11.23 29.42 0.33 -10.21 14 6 S 0.11 3.02 20.27 -107.50 -2.18 0.84 14 7 C 0.04 1.20 6.19 -38.94 -0.24 0.96 14 8 C -0.39 -10.07 8.88 -38.27 -0.34 -10.41 14 9 H 0.09 2.31 6.92 -52.49 -0.36 1.94 14 10 C 0.05 1.24 5.50 -17.28 -0.09 1.14 14 11 N -0.79 -19.64 10.65 55.56 0.59 -19.05 14 12 Si 0.93 18.06 29.56 -169.99 -5.03 13.04 14 13 H -0.27 -5.10 7.11 56.52 0.40 -4.70 14 14 H -0.27 -5.19 7.11 56.52 0.40 -4.78 14 15 H -0.26 -4.96 7.11 56.52 0.40 -4.56 14 16 H 0.04 0.82 8.14 -51.93 -0.42 0.40 14 17 H 0.03 0.54 8.14 -51.93 -0.42 0.12 14 18 H 0.05 1.13 8.14 -51.93 -0.42 0.71 14 19 H 0.05 1.05 7.27 -51.93 -0.38 0.67 14 20 H 0.04 0.75 8.11 -51.93 -0.42 0.33 14 21 H 0.09 2.00 8.06 -52.49 -0.42 1.57 14 22 H 0.12 2.67 8.06 -52.48 -0.42 2.25 14 23 H 0.29 6.62 8.30 -40.82 -0.34 6.28 14 LS Contribution 215.53 15.07 3.25 3.25 Total: -1.00 -27.28 215.53 -6.87 -34.14 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -2.41 Total: 0.24 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: -1.09 Total: -32.46 kcal Atomic # 7 Polarization: -19.64 SS G_CDS: 0.59 Total: -19.05 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.18 Total: 0.84 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -27.28 -6.87 -34.14 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142918526.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.830 kcal (2) G-P(sol) polarization free energy of solvation -27.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds