Wall clock time and date at job start Mon Mar 30 2020 02:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33387 * 125.20533 * 2 1 4 4 C 1.38431 * 114.92130 * 180.02562 * 3 2 1 5 5 C 1.33387 * 114.91840 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.20285 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47266 * 89.99451 * 6 5 4 8 8 H 1.07999 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37885 * 120.00047 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99792 * 359.72305 * 9 7 6 11 11 Si 1.86795 * 120.00009 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47021 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47081 * 119.99727 * 11 9 7 14 14 H 1.48501 * 109.47213 * 240.00099 * 11 9 7 15 15 S 1.75888 * 109.59732 * 0.23775 * 5 4 3 16 16 H 1.09002 * 109.47431 * 89.99467 * 1 2 3 17 17 H 1.08998 * 109.47270 * 210.00108 * 1 2 3 18 18 H 1.09002 * 109.47394 * 329.99839 * 1 2 3 19 19 H 1.07998 * 122.54288 * 0.02562 * 3 2 1 20 20 H 1.07989 * 122.53734 * 180.02562 * 4 3 2 21 21 H 1.09004 * 109.47205 * 329.99544 * 6 5 4 22 22 H 1.08997 * 109.47395 * 210.00037 * 6 5 4 23 23 H 0.97000 * 119.99468 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 3.9750 -0.4478 -0.0016 6 6 5.3859 -0.9773 -0.0029 7 6 5.8573 -1.1545 1.4175 8 1 5.2007 -0.9087 2.2390 9 6 7.1269 -1.6304 1.6682 10 7 7.9245 -1.9348 0.6678 11 14 7.7110 -1.8507 3.4288 12 1 6.6301 -1.4458 4.3632 13 1 8.0582 -3.2758 3.6604 14 1 8.9091 -1.0049 3.6624 15 16 2.5208 -1.4373 -0.0087 16 1 -0.3634 0.0001 -1.0277 17 1 -0.3634 -0.8899 0.5138 18 1 -0.3634 0.8900 0.5139 19 1 1.8670 2.0895 0.0004 20 1 4.3720 1.6348 -0.0002 21 1 6.0384 -0.2714 -0.5169 22 1 5.4131 -1.9378 -0.5173 23 1 8.8178 -2.2692 0.8442 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000145043453.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:48 Heat of formation + Delta-G solvation = 10.883373 kcal Electronic energy + Delta-G solvation = -8509.922676 eV Core-core repulsion = 6835.095431 eV Total energy + Delta-G solvation = -1674.827245 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 182.046 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.29538 -33.51917 -31.65270 -28.85893 -25.17411 -22.85632 -21.61615 -17.98762 -16.39583 -16.00092 -14.73243 -14.20987 -13.54651 -12.77126 -12.48585 -12.39197 -12.09182 -11.48180 -11.15757 -11.01765 -10.64884 -10.46395 -10.02727 -9.73559 -9.45442 -8.46276 -7.76764 -7.57652 -6.08088 -4.12598 1.79282 2.36033 2.81014 3.28196 3.35379 3.40535 3.52439 4.41985 5.26857 5.34046 5.55902 5.73581 5.85222 6.02630 6.33183 6.47169 6.80071 7.07696 7.21669 7.43684 7.62457 7.87168 8.23729 8.91767 9.51477 11.01519 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.074359 B = 0.010341 C = 0.010172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.459728 B = 2706.943828 C = 2752.101009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.224 4.224 3 C -0.124 4.124 4 C -0.185 4.185 5 C -0.095 4.095 6 C 0.075 3.925 7 C -0.513 4.513 8 H 0.060 0.940 9 C 0.058 3.942 10 N -0.894 5.894 11 Si 0.898 3.102 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.283 1.283 15 S 0.066 5.934 16 H 0.064 0.936 17 H 0.061 0.939 18 H 0.066 0.934 19 H 0.125 0.875 20 H 0.132 0.868 21 H 0.041 0.959 22 H 0.031 0.969 23 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.324 3.051 -1.093 10.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.341 4.341 3 C -0.155 4.155 4 C -0.212 4.212 5 C -0.212 4.212 6 C 0.036 3.964 7 C -0.551 4.551 8 H 0.078 0.922 9 C -0.143 4.143 10 N -0.533 5.533 11 Si 0.725 3.275 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.209 1.209 15 S 0.328 5.672 16 H 0.082 0.918 17 H 0.080 0.920 18 H 0.085 0.915 19 H 0.143 0.857 20 H 0.150 0.850 21 H 0.059 0.941 22 H 0.049 0.951 23 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.441 1.444 -1.146 10.603 hybrid contribution 0.766 1.406 0.968 1.871 sum -9.676 2.850 -0.178 10.088 Atomic orbital electron populations 1.20164 0.88894 1.02176 1.01683 1.24214 0.99116 0.96393 1.14366 1.19967 0.93331 0.98268 1.03905 1.19970 0.95416 0.96466 1.09383 1.25339 1.00006 0.95304 1.00570 1.18010 0.83459 0.96676 0.98236 1.21107 0.98944 1.43855 0.91236 0.92205 1.25017 0.96592 0.95224 0.97487 1.69966 1.08221 1.44387 1.30691 0.86433 0.78721 0.77825 0.84495 1.19592 1.20851 1.20860 1.84081 0.98069 1.10386 1.74623 0.91768 0.92011 0.91484 0.85672 0.84982 0.94074 0.95054 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.38 36.00 0.37 -0.53 14 2 C -0.22 -3.85 6.51 -36.01 -0.23 -4.08 14 3 C -0.12 -2.19 10.05 -41.21 -0.41 -2.60 14 4 C -0.18 -3.78 10.05 -41.21 -0.41 -4.20 14 5 C -0.09 -2.15 5.70 -36.00 -0.21 -2.36 14 6 C 0.07 1.98 5.47 -29.04 -0.16 1.82 14 7 C -0.51 -14.58 9.09 -34.44 -0.31 -14.89 14 8 H 0.06 1.70 7.74 -52.49 -0.41 1.30 14 9 C 0.06 1.66 5.46 -17.82 -0.10 1.57 14 10 N -0.89 -26.46 13.29 55.43 0.74 -25.73 14 11 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 14 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 14 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 14 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 14 15 S 0.07 1.29 23.31 -107.50 -2.51 -1.21 14 16 H 0.06 0.73 8.14 -51.93 -0.42 0.31 14 17 H 0.06 0.74 8.14 -51.93 -0.42 0.32 14 18 H 0.07 0.75 8.14 -51.93 -0.42 0.32 14 19 H 0.13 1.84 8.06 -52.49 -0.42 1.42 14 20 H 0.13 2.59 8.06 -52.49 -0.42 2.16 14 21 H 0.04 1.13 8.14 -51.93 -0.42 0.70 14 22 H 0.03 0.86 8.14 -51.93 -0.42 0.44 14 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 14 LS Contribution 223.04 15.07 3.36 3.36 Total: -1.00 -29.58 223.04 -7.39 -36.97 By element: Atomic # 1 Polarization: -2.28 SS G_CDS: -2.50 Total: -4.78 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -1.46 Total: -25.27 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.74 Total: -25.73 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.51 Total: -1.21 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -29.58 -7.39 -36.97 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145043453.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.853 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds