Wall clock time and date at job start Mon Mar 30 2020 02:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33387 * 125.20533 * 2 1 4 4 C 1.38431 * 114.92130 * 180.02562 * 3 2 1 5 5 C 1.33387 * 114.91840 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.20285 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47266 * 89.99451 * 6 5 4 8 8 H 1.07999 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37885 * 120.00047 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99792 * 359.72305 * 9 7 6 11 11 Si 1.86795 * 120.00009 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47021 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47081 * 119.99727 * 11 9 7 14 14 H 1.48501 * 109.47213 * 240.00099 * 11 9 7 15 15 S 1.75888 * 109.59732 * 0.23775 * 5 4 3 16 16 H 1.09002 * 109.47431 * 89.99467 * 1 2 3 17 17 H 1.08998 * 109.47270 * 210.00108 * 1 2 3 18 18 H 1.09002 * 109.47394 * 329.99839 * 1 2 3 19 19 H 1.07998 * 122.54288 * 0.02562 * 3 2 1 20 20 H 1.07989 * 122.53734 * 180.02562 * 4 3 2 21 21 H 1.09004 * 109.47205 * 329.99544 * 6 5 4 22 22 H 1.08997 * 109.47395 * 210.00037 * 6 5 4 23 23 H 0.97000 * 119.99468 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 3.9750 -0.4478 -0.0016 6 6 5.3859 -0.9773 -0.0029 7 6 5.8573 -1.1545 1.4175 8 1 5.2007 -0.9087 2.2390 9 6 7.1269 -1.6304 1.6682 10 7 7.9245 -1.9348 0.6678 11 14 7.7110 -1.8507 3.4288 12 1 6.6301 -1.4458 4.3632 13 1 8.0582 -3.2758 3.6604 14 1 8.9091 -1.0049 3.6624 15 16 2.5208 -1.4373 -0.0087 16 1 -0.3634 0.0001 -1.0277 17 1 -0.3634 -0.8899 0.5138 18 1 -0.3634 0.8900 0.5139 19 1 1.8670 2.0895 0.0004 20 1 4.3720 1.6348 -0.0002 21 1 6.0384 -0.2714 -0.5169 22 1 5.4131 -1.9378 -0.5173 23 1 8.8178 -2.2692 0.8442 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000145043453.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:48 Heat of formation + Delta-G solvation = -6.016884 kcal Electronic energy + Delta-G solvation = -8510.655526 eV Core-core repulsion = 6835.095431 eV Total energy + Delta-G solvation = -1675.560095 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 182.046 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.81906 -35.52699 -33.32113 -30.55126 -26.95281 -24.56075 -23.27750 -19.52324 -18.57788 -17.60144 -16.59048 -15.82654 -14.85440 -14.37030 -14.17690 -14.04094 -13.70802 -13.01926 -12.90253 -12.63370 -12.46603 -12.19855 -11.78685 -11.52772 -11.48011 -10.65099 -9.30755 -9.16470 -8.24405 -6.39347 0.26807 0.84148 1.26572 1.38143 1.38416 1.52430 1.98163 2.38795 3.05907 4.10415 4.32887 4.53539 4.75594 4.82596 4.88058 5.11049 5.18252 5.23707 5.43222 5.62728 5.69749 5.83398 6.08652 6.71354 7.29504 8.84460 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.074359 B = 0.010341 C = 0.010172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.459728 B = 2706.943828 C = 2752.101009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.196 4.196 3 C -0.138 4.138 4 C -0.172 4.172 5 C -0.151 4.151 6 C 0.086 3.914 7 C -0.531 4.531 8 H 0.054 0.946 9 C 0.005 3.995 10 N -0.929 5.929 11 Si 0.969 3.031 12 H -0.266 1.266 13 H -0.274 1.274 14 H -0.273 1.273 15 S 0.056 5.944 16 H 0.085 0.915 17 H 0.071 0.929 18 H 0.093 0.907 19 H 0.164 0.836 20 H 0.132 0.868 21 H 0.015 0.985 22 H 0.004 0.996 23 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.231 3.872 -0.077 12.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.313 4.313 3 C -0.168 4.168 4 C -0.201 4.201 5 C -0.268 4.268 6 C 0.047 3.953 7 C -0.570 4.570 8 H 0.073 0.927 9 C -0.193 4.193 10 N -0.568 5.568 11 Si 0.793 3.207 12 H -0.190 1.190 13 H -0.200 1.200 14 H -0.199 1.199 15 S 0.319 5.681 16 H 0.104 0.896 17 H 0.090 0.910 18 H 0.111 0.889 19 H 0.181 0.819 20 H 0.150 0.850 21 H 0.034 0.966 22 H 0.022 0.978 23 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.354 2.267 -0.136 12.561 hybrid contribution 1.255 1.188 0.593 1.827 sum -11.098 3.454 0.457 11.633 Atomic orbital electron populations 1.20379 0.85167 1.03952 1.03603 1.24856 1.01179 0.94442 1.10840 1.20219 0.91750 1.00328 1.04506 1.20243 0.97286 0.95533 1.06994 1.24949 0.99386 0.96955 1.05469 1.17631 0.86021 0.94745 0.96854 1.21389 0.99370 1.44134 0.92088 0.92748 1.25954 0.96625 0.94616 1.02126 1.70081 1.08714 1.44967 1.33080 0.85332 0.78342 0.78136 0.78869 1.18977 1.19986 1.19858 1.83990 0.97347 1.11836 1.74938 0.89632 0.91046 0.88862 0.81891 0.84975 0.96645 0.97795 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 10.38 71.23 0.74 -0.77 14 2 C -0.20 -6.12 6.51 24.59 0.16 -5.96 14 3 C -0.14 -4.49 10.05 21.22 0.21 -4.28 14 4 C -0.17 -6.95 10.05 21.22 0.21 -6.73 14 5 C -0.15 -6.99 5.70 24.59 0.14 -6.85 14 6 C 0.09 4.78 5.47 29.10 0.16 4.94 14 7 C -0.53 -31.13 9.09 25.60 0.23 -30.90 14 8 H 0.05 3.16 7.74 -2.91 -0.02 3.14 14 9 C 0.01 0.30 5.46 84.66 0.46 0.77 14 10 N -0.93 -56.41 13.29 21.45 0.28 -56.12 14 11 Si 0.97 44.76 29.54 68.60 2.03 46.79 14 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 14 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 14 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 14 15 S 0.06 2.19 23.31 -56.49 -1.32 0.87 14 16 H 0.09 1.51 8.14 -2.39 -0.02 1.49 14 17 H 0.07 1.40 8.14 -2.39 -0.02 1.38 14 18 H 0.09 1.55 8.14 -2.39 -0.02 1.53 14 19 H 0.16 4.06 8.06 -2.91 -0.02 4.03 14 20 H 0.13 5.19 8.06 -2.92 -0.02 5.17 14 21 H 0.02 0.90 8.14 -2.38 -0.02 0.88 14 22 H 0.00 0.22 8.14 -2.39 -0.02 0.20 14 23 H 0.27 15.11 8.31 -92.71 -0.77 14.34 14 Total: -1.00 -64.76 223.04 4.50 -60.26 By element: Atomic # 1 Polarization: -3.20 SS G_CDS: 1.18 Total: -2.02 kcal Atomic # 6 Polarization: -52.10 SS G_CDS: 2.32 Total: -49.78 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.28 Total: -56.12 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -1.32 Total: 0.87 kcal Total: -64.76 4.50 -60.26 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145043453.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.245 kcal (2) G-P(sol) polarization free energy of solvation -64.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds