Wall clock time and date at job start Mon Mar 30 2020 02:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33386 * 122.53763 * 2 1 4 4 S 1.75891 * 109.59176 * 179.74980 * 3 2 1 5 5 C 1.75886 * 90.96733 * 0.23276 * 4 3 2 6 6 C 1.50709 * 125.19972 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.46654 * 270.02066 * 6 5 4 8 8 H 1.07997 * 120.00408 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99687 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00261 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00084 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47088 * 89.99780 * 11 9 7 13 13 H 1.48497 * 109.47397 * 210.00205 * 11 9 7 14 14 H 1.48498 * 109.46986 * 330.00147 * 11 9 7 15 15 C 1.33384 * 109.59693 * 359.97438 * 5 4 3 16 16 H 1.09002 * 109.46861 * 90.02234 * 1 2 3 17 17 H 1.08996 * 109.46955 * 210.02379 * 1 2 3 18 18 H 1.08999 * 109.46605 * 330.02360 * 1 2 3 19 19 H 1.08002 * 125.20849 * 0.02562 * 3 2 1 20 20 H 1.08998 * 109.47224 * 30.02114 * 6 5 4 21 21 H 1.08995 * 109.46643 * 150.02296 * 6 5 4 22 22 H 0.97006 * 120.00380 * 180.02562 * 10 9 7 23 23 H 1.07997 * 122.54195 * 179.97438 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2245 1.1245 0.0000 4 16 3.9387 0.7305 0.0072 5 6 3.5737 -0.9901 0.0028 6 6 4.5981 -2.0955 0.0052 7 6 4.9457 -2.4611 -1.4148 8 1 4.4720 -1.9450 -2.2368 9 6 5.8678 -3.4552 -1.6647 10 7 6.4436 -4.0847 -0.6638 11 14 6.2983 -3.9090 -3.4249 12 1 7.4395 -3.0779 -3.8854 13 1 6.6738 -5.3443 -3.4885 14 1 5.1237 -3.6654 -4.3002 15 6 2.2516 -1.1669 -0.0030 16 1 -0.3633 -0.0004 -1.0277 17 1 -0.3633 -0.8897 0.5142 18 1 -0.3632 0.8902 0.5135 19 1 1.8155 2.1241 0.0004 20 1 5.4955 -1.7581 0.5236 21 1 4.1899 -2.9679 0.5155 22 1 7.0926 -4.7839 -0.8396 23 1 1.7965 -2.1463 -0.0070 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000146887446.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:24 Heat of formation + Delta-G solvation = 11.085982 kcal Electronic energy + Delta-G solvation = -8543.414012 eV Core-core repulsion = 6868.595552 eV Total energy + Delta-G solvation = -1674.818459 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 182.046 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.60681 -33.49178 -31.18057 -27.99915 -26.38419 -23.49161 -20.51861 -18.14339 -16.45879 -16.16514 -14.66142 -14.08500 -13.49386 -12.68330 -12.46799 -12.28127 -12.05449 -11.50431 -11.14221 -11.04937 -10.67785 -10.50404 -10.00740 -9.74280 -9.48895 -8.46031 -7.74970 -7.61364 -6.08230 -4.12812 1.81551 2.43345 2.81984 3.29360 3.34966 3.38574 3.47052 4.41724 5.26718 5.47693 5.52737 5.79319 5.88074 6.09971 6.28393 6.49711 6.79994 7.10918 7.21523 7.43203 7.61261 7.86764 8.23235 8.91161 9.51245 11.01407 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.060893 B = 0.010881 C = 0.010465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.716359 B = 2572.759613 C = 2675.031168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.091 4.091 3 C -0.257 4.257 4 S 0.062 5.938 5 C -0.091 4.091 6 C 0.075 3.925 7 C -0.513 4.513 8 H 0.059 0.941 9 C 0.059 3.941 10 N -0.894 5.894 11 Si 0.898 3.102 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.273 1.273 15 C -0.184 4.184 16 H 0.064 0.936 17 H 0.063 0.937 18 H 0.058 0.942 19 H 0.150 0.850 20 H 0.032 0.968 21 H 0.041 0.959 22 H 0.263 0.737 23 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.527 6.949 1.069 10.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.392 4.392 4 S 0.325 5.675 5 C -0.208 4.208 6 C 0.036 3.964 7 C -0.552 4.552 8 H 0.077 0.923 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.726 3.274 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.197 1.197 15 C -0.212 4.212 16 H 0.082 0.918 17 H 0.082 0.918 18 H 0.077 0.923 19 H 0.168 0.832 20 H 0.050 0.950 21 H 0.059 0.941 22 H 0.073 0.927 23 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.064 7.675 1.124 9.845 hybrid contribution -0.963 -1.075 -0.987 1.748 sum -7.026 6.600 0.137 9.641 Atomic orbital electron populations 1.20457 0.90869 1.01883 1.01659 1.18875 0.96594 0.92488 1.02487 1.25106 0.96357 1.01337 1.16386 1.84101 1.05897 1.03093 1.74394 1.25354 0.98687 0.96758 1.00015 1.18012 0.90850 0.89268 0.98246 1.21055 1.23695 1.19279 0.91193 0.92268 1.25008 0.95846 0.95936 0.97475 1.69952 1.28141 1.24406 1.30740 0.86485 0.78843 0.77612 0.84502 1.20500 1.21077 1.19739 1.19875 0.92763 0.98646 1.09875 0.91771 0.91847 0.92312 0.83243 0.95017 0.94061 0.92719 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 10.14 36.01 0.37 -0.83 14 2 C -0.09 -1.60 5.80 -106.25 -0.62 -2.22 14 3 C -0.26 -4.42 10.98 29.04 0.32 -4.10 14 4 S 0.06 1.20 23.33 -107.50 -2.51 -1.30 14 5 C -0.09 -2.05 5.70 -36.00 -0.21 -2.26 14 6 C 0.08 1.97 5.47 -29.03 -0.16 1.81 14 7 C -0.51 -14.56 9.09 -34.44 -0.31 -14.87 14 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 14 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 14 10 N -0.89 -26.39 13.29 55.43 0.74 -25.65 14 11 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 14 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 14 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 14 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 14 15 C -0.18 -3.76 9.85 -41.21 -0.41 -4.16 14 16 H 0.06 0.80 8.14 -51.93 -0.42 0.38 14 17 H 0.06 0.79 8.13 -51.93 -0.42 0.36 14 18 H 0.06 0.67 8.12 -51.93 -0.42 0.25 14 19 H 0.15 2.12 8.06 -52.49 -0.42 1.69 14 20 H 0.03 0.87 8.14 -51.93 -0.42 0.45 14 21 H 0.04 1.13 8.14 -51.93 -0.42 0.70 14 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 14 23 H 0.13 2.61 8.06 -52.49 -0.42 2.18 14 LS Contribution 222.79 15.07 3.36 3.36 Total: -1.00 -29.37 222.79 -7.05 -36.42 By element: Atomic # 1 Polarization: -1.90 SS G_CDS: -2.50 Total: -4.40 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -1.11 Total: -25.04 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.74 Total: -25.65 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.51 Total: -1.30 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -29.37 -7.05 -36.42 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000146887446.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.505 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds