Wall clock time and date at job start Mon Mar 30 2020 02:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33386 * 122.53763 * 2 1 4 4 S 1.75891 * 109.59176 * 179.74980 * 3 2 1 5 5 C 1.75886 * 90.96733 * 0.23276 * 4 3 2 6 6 C 1.50709 * 125.19972 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.46654 * 270.02066 * 6 5 4 8 8 H 1.07997 * 120.00408 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99687 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00261 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00084 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47088 * 89.99780 * 11 9 7 13 13 H 1.48497 * 109.47397 * 210.00205 * 11 9 7 14 14 H 1.48498 * 109.46986 * 330.00147 * 11 9 7 15 15 C 1.33384 * 109.59693 * 359.97438 * 5 4 3 16 16 H 1.09002 * 109.46861 * 90.02234 * 1 2 3 17 17 H 1.08996 * 109.46955 * 210.02379 * 1 2 3 18 18 H 1.08999 * 109.46605 * 330.02360 * 1 2 3 19 19 H 1.08002 * 125.20849 * 0.02562 * 3 2 1 20 20 H 1.08998 * 109.47224 * 30.02114 * 6 5 4 21 21 H 1.08995 * 109.46643 * 150.02296 * 6 5 4 22 22 H 0.97006 * 120.00380 * 180.02562 * 10 9 7 23 23 H 1.07997 * 122.54195 * 179.97438 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2245 1.1245 0.0000 4 16 3.9387 0.7305 0.0072 5 6 3.5737 -0.9901 0.0028 6 6 4.5981 -2.0955 0.0052 7 6 4.9457 -2.4611 -1.4148 8 1 4.4720 -1.9450 -2.2368 9 6 5.8678 -3.4552 -1.6647 10 7 6.4436 -4.0847 -0.6638 11 14 6.2983 -3.9090 -3.4249 12 1 7.4395 -3.0779 -3.8854 13 1 6.6738 -5.3443 -3.4885 14 1 5.1237 -3.6654 -4.3002 15 6 2.2516 -1.1669 -0.0030 16 1 -0.3633 -0.0004 -1.0277 17 1 -0.3633 -0.8897 0.5142 18 1 -0.3632 0.8902 0.5135 19 1 1.8155 2.1241 0.0004 20 1 5.4955 -1.7581 0.5236 21 1 4.1899 -2.9679 0.5155 22 1 7.0926 -4.7839 -0.8396 23 1 1.7965 -2.1463 -0.0070 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000146887446.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:24 Heat of formation + Delta-G solvation = -5.680346 kcal Electronic energy + Delta-G solvation = -8544.141054 eV Core-core repulsion = 6868.595552 eV Total energy + Delta-G solvation = -1675.545502 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 182.046 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.10559 -35.53505 -32.98347 -29.54026 -27.94842 -25.47395 -22.17706 -19.62096 -18.59027 -17.82444 -16.57480 -15.65591 -14.85808 -14.34582 -14.21664 -13.91136 -13.64618 -12.96637 -12.88127 -12.62402 -12.44332 -12.26751 -11.80927 -11.55547 -11.47761 -10.64311 -9.37327 -9.11698 -8.24420 -6.39050 0.28470 0.88764 1.30328 1.38593 1.39881 1.51469 1.93439 2.38904 3.06366 4.15318 4.26701 4.60651 4.70298 4.87486 4.91671 5.01856 5.19558 5.23485 5.54511 5.63871 5.71194 5.82798 6.08387 6.71236 7.29744 8.84591 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.060893 B = 0.010881 C = 0.010465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.716359 B = 2572.759613 C = 2675.031168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.103 4.103 3 C -0.233 4.233 4 S 0.058 5.942 5 C -0.143 4.143 6 C 0.086 3.914 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.006 3.994 10 N -0.928 5.928 11 Si 0.969 3.031 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.266 1.266 15 C -0.174 4.174 16 H 0.076 0.924 17 H 0.069 0.931 18 H 0.084 0.916 19 H 0.191 0.809 20 H 0.005 0.995 21 H 0.016 0.984 22 H 0.267 0.733 23 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.037 8.198 0.055 12.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.367 4.367 4 S 0.321 5.679 5 C -0.260 4.260 6 C 0.047 3.953 7 C -0.571 4.571 8 H 0.073 0.927 9 C -0.192 4.192 10 N -0.568 5.568 11 Si 0.793 3.207 12 H -0.196 1.196 13 H -0.202 1.202 14 H -0.190 1.190 15 C -0.203 4.203 16 H 0.094 0.906 17 H 0.088 0.912 18 H 0.103 0.897 19 H 0.208 0.792 20 H 0.023 0.977 21 H 0.034 0.966 22 H 0.076 0.924 23 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.579 8.932 0.116 11.715 hybrid contribution -0.554 -1.408 -0.615 1.633 sum -8.133 7.525 -0.499 11.091 Atomic orbital electron populations 1.20535 0.87375 1.03595 1.02951 1.19210 0.98965 0.91135 1.02256 1.25591 0.94274 1.03094 1.13750 1.84000 1.08599 1.00670 1.74622 1.24989 0.98798 0.97762 1.04482 1.17643 0.90852 0.89919 0.96898 1.21341 1.24051 1.19615 0.92044 0.92737 1.25941 0.95542 0.95680 1.02087 1.70070 1.28667 1.24919 1.33107 0.85389 0.78797 0.77630 0.78920 1.19616 1.20181 1.19006 1.20153 0.92301 1.00070 1.07751 0.90550 0.91184 0.89694 0.79231 0.97682 0.96614 0.92363 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.93 10.14 71.24 0.72 -1.21 14 2 C -0.10 -3.34 5.80 -20.92 -0.12 -3.46 14 3 C -0.23 -7.21 10.98 66.72 0.73 -6.47 14 4 S 0.06 2.21 23.33 -56.49 -1.32 0.89 14 5 C -0.14 -6.60 5.70 24.59 0.14 -6.46 14 6 C 0.09 4.72 5.47 29.10 0.16 4.88 14 7 C -0.53 -31.00 9.09 25.60 0.23 -30.77 14 8 H 0.05 3.14 7.74 -2.91 -0.02 3.12 14 9 C 0.01 0.35 5.46 84.65 0.46 0.81 14 10 N -0.93 -56.15 13.29 21.45 0.28 -55.87 14 11 Si 0.97 44.58 29.54 68.60 2.03 46.61 14 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 14 13 H -0.28 -12.27 7.11 99.48 0.71 -11.56 14 14 H -0.27 -11.83 7.11 99.48 0.71 -11.13 14 15 C -0.17 -7.01 9.85 21.22 0.21 -6.80 14 16 H 0.08 1.58 8.14 -2.39 -0.02 1.56 14 17 H 0.07 1.50 8.13 -2.39 -0.02 1.48 14 18 H 0.08 1.50 8.12 -2.39 -0.02 1.49 14 19 H 0.19 4.34 8.06 -2.91 -0.02 4.32 14 20 H 0.00 0.29 8.14 -2.39 -0.02 0.27 14 21 H 0.02 0.91 8.14 -2.39 -0.02 0.89 14 22 H 0.27 15.10 8.31 -92.70 -0.77 14.33 14 23 H 0.13 5.17 8.06 -2.91 -0.02 5.15 14 Total: -1.00 -63.99 222.79 4.71 -59.27 By element: Atomic # 1 Polarization: -2.60 SS G_CDS: 1.18 Total: -1.42 kcal Atomic # 6 Polarization: -52.02 SS G_CDS: 2.54 Total: -49.49 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.28 Total: -55.87 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.32 Total: 0.89 kcal Total: -63.99 4.71 -59.27 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000146887446.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.591 kcal (2) G-P(sol) polarization free energy of solvation -63.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds