Wall clock time and date at job start Mon Mar 30 2020 02:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47020 * 2 1 4 4 C 1.50699 * 109.47063 * 120.00200 * 2 1 3 5 5 H 1.07998 * 120.00115 * 120.00085 * 4 2 1 6 6 C 1.37881 * 119.99845 * 299.99608 * 4 2 1 7 7 N 1.31516 * 119.99789 * 179.97438 * 6 4 2 8 8 Si 1.86790 * 119.99936 * 0.02562 * 6 4 2 9 9 H 1.48507 * 109.47314 * 89.99854 * 8 6 4 10 10 H 1.48505 * 109.47149 * 209.99994 * 8 6 4 11 11 H 1.48499 * 109.47326 * 329.99764 * 8 6 4 12 12 N 1.46906 * 109.46834 * 240.00060 * 2 1 3 13 13 C 1.46788 * 111.13704 * 296.93738 * 12 2 1 14 14 C 1.50145 * 110.41507 * 174.11638 * 13 12 2 15 15 C 1.29818 * 123.28366 * 343.09131 * 14 13 12 16 16 C 1.50304 * 122.89592 * 0.34891 * 15 14 13 17 17 C 1.47239 * 111.00004 * 60.00091 * 12 2 1 18 18 H 1.09002 * 109.47458 * 59.99684 * 1 2 3 19 19 H 1.08998 * 109.47537 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46955 * 299.99801 * 1 2 3 21 21 H 0.96999 * 119.99533 * 179.97438 * 7 6 4 22 22 H 1.08999 * 109.15277 * 53.90048 * 13 12 2 23 23 H 1.09000 * 109.24888 * 294.39642 * 13 12 2 24 24 H 1.08002 * 118.35435 * 163.06574 * 14 13 12 25 25 H 1.08006 * 118.55215 * 180.36957 * 15 14 13 26 26 H 1.08999 * 109.43124 * 223.44962 * 16 15 14 27 27 H 1.09007 * 109.38991 * 103.57572 * 16 15 14 28 28 H 1.09002 * 109.63847 * 48.11079 * 17 12 2 29 29 H 1.08999 * 109.63658 * 287.70548 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8597 3.5565 8 14 0.6249 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9761 1.9951 3.9068 11 1 0.8472 2.1765 1.4920 12 7 2.0196 -0.6925 -1.1995 13 6 1.6113 -2.1025 -1.2005 14 6 1.9950 -2.7580 -2.4956 15 6 2.3052 -2.0927 -3.5663 16 6 2.3196 -0.5907 -3.6186 17 6 1.5475 -0.0248 -2.4239 18 1 -0.3634 0.5139 -0.8899 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.9032 -0.5280 4.4375 22 1 0.5305 -2.1618 -1.0723 23 1 2.1014 -2.6191 -0.3753 24 1 2.0144 -3.8370 -2.5383 25 1 2.5639 -2.6428 -4.4590 26 1 1.8518 -0.2555 -4.5443 27 1 3.3503 -0.2373 -3.5845 28 1 1.7250 1.0480 -2.3479 29 1 0.4816 -0.2113 -2.5551 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147698269.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:05 Heat of formation + Delta-G solvation = 27.621542 kcal Electronic energy + Delta-G solvation = -11237.462188 eV Core-core repulsion = 9354.159650 eV Total energy + Delta-G solvation = -1883.302538 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.58917 -34.45572 -32.00394 -30.30624 -28.98577 -25.27742 -23.94947 -22.51674 -19.88339 -17.26369 -16.33230 -15.88444 -14.74740 -14.42879 -13.61697 -13.37846 -13.09629 -12.38266 -12.24048 -12.11995 -11.71350 -11.32495 -11.05093 -10.68411 -10.41677 -10.13738 -9.78187 -9.47602 -8.97084 -8.61111 -8.51396 -7.29056 -6.06209 -4.04659 2.70920 3.26054 3.36650 3.38956 4.40084 4.83349 5.21872 5.26015 5.39104 5.72904 5.82111 5.96827 6.01713 6.18811 6.24182 6.29019 6.42203 6.46737 6.55908 6.67493 6.85514 6.95349 7.24056 7.36933 7.62751 7.98598 8.13041 8.66959 9.00451 9.55897 11.06727 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.066441 B = 0.013391 C = 0.012057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.322824 B = 2090.492163 C = 2321.754378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.179 3.821 3 H 0.042 0.958 4 C -0.505 4.505 5 H 0.083 0.917 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.268 1.268 12 N -0.516 5.516 13 C 0.083 3.917 14 C -0.147 4.147 15 C -0.167 4.167 16 C -0.082 4.082 17 C 0.046 3.954 18 H 0.030 0.970 19 H 0.054 0.946 20 H 0.045 0.955 21 H 0.264 0.736 22 H 0.042 0.958 23 H 0.096 0.904 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.628 0.438 -11.042 11.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.071 3.929 3 H 0.060 0.940 4 C -0.543 4.543 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.193 1.193 12 N -0.240 5.240 13 C -0.044 4.044 14 C -0.165 4.165 15 C -0.185 4.185 16 C -0.120 4.120 17 C -0.083 4.083 18 H 0.049 0.951 19 H 0.073 0.927 20 H 0.063 0.937 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.114 0.886 24 H 0.119 0.881 25 H 0.113 0.887 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -2.094 0.455 -10.828 11.038 hybrid contribution -1.549 0.681 0.231 1.708 sum -3.643 1.135 -10.597 11.263 Atomic orbital electron populations 1.22826 1.01822 1.00919 0.98990 1.19815 0.88654 0.95465 0.88938 0.94049 1.20984 1.31618 1.13819 0.87908 0.89953 1.24925 0.95867 0.96595 0.95820 1.69883 1.45747 1.40317 0.97865 0.86871 0.80483 0.83926 0.76922 1.20816 1.22425 1.19327 1.62507 1.58574 1.01414 1.01460 1.20931 0.98291 0.89924 0.95262 1.22446 0.99771 0.99104 0.95224 1.22035 1.02763 0.96045 0.97695 1.20489 1.01048 0.93117 0.97306 1.22145 0.96277 0.98541 0.91293 0.95113 0.92667 0.93693 0.92640 0.93984 0.88582 0.88057 0.88673 0.91907 0.90714 0.91387 0.95370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.13 7.99 37.16 0.30 -3.83 15 2 C 0.18 4.30 1.98 -68.86 -0.14 4.17 15 3 H 0.04 1.04 7.17 -51.93 -0.37 0.66 15 4 C -0.51 -14.18 8.57 -34.44 -0.30 -14.47 15 5 H 0.08 2.51 6.71 -52.49 -0.35 2.16 15 6 C 0.07 2.00 5.45 -17.82 -0.10 1.91 15 7 N -0.90 -27.48 13.96 55.43 0.77 -26.70 15 8 Si 0.89 22.03 24.37 -169.99 -4.14 17.89 15 9 H -0.28 -6.82 6.87 56.52 0.39 -6.43 15 10 H -0.30 -7.38 7.11 56.52 0.40 -6.98 15 11 H -0.27 -6.39 6.53 56.52 0.37 -6.03 15 12 N -0.52 -11.05 4.74 -229.56 -1.09 -12.14 15 13 C 0.08 1.67 5.02 -5.31 -0.03 1.64 15 14 C -0.15 -2.45 9.93 -35.96 -0.36 -2.81 15 15 C -0.17 -2.56 9.94 -35.89 -0.36 -2.91 15 16 C -0.08 -1.24 6.32 -28.03 -0.18 -1.42 15 17 C 0.05 0.82 4.78 -3.59 -0.02 0.80 15 18 H 0.03 0.59 6.69 -51.93 -0.35 0.24 15 19 H 0.05 1.20 6.35 -51.93 -0.33 0.87 15 20 H 0.04 1.03 3.27 -51.93 -0.17 0.86 15 21 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 22 H 0.04 0.85 6.08 -51.93 -0.32 0.53 15 23 H 0.10 2.12 6.49 -51.93 -0.34 1.79 15 24 H 0.10 1.47 8.06 -52.49 -0.42 1.05 15 25 H 0.10 1.23 8.06 -52.48 -0.42 0.81 15 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 27 H 0.07 1.13 8.14 -51.92 -0.42 0.71 15 28 H 0.07 1.17 8.04 -51.93 -0.42 0.75 15 29 H 0.03 0.49 6.98 -51.93 -0.36 0.13 15 LS Contribution 222.05 15.07 3.35 3.35 Total: -1.00 -29.67 222.05 -6.15 -35.82 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -3.88 Total: -1.28 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -1.17 Total: -16.93 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -0.31 Total: -38.85 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -29.67 -6.15 -35.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147698269.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.446 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds