Wall clock time and date at job start Mon Mar 30 2020 02:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47020 * 2 1 4 4 C 1.50699 * 109.47063 * 120.00200 * 2 1 3 5 5 H 1.07998 * 120.00115 * 120.00085 * 4 2 1 6 6 C 1.37881 * 119.99845 * 299.99608 * 4 2 1 7 7 N 1.31516 * 119.99789 * 179.97438 * 6 4 2 8 8 Si 1.86790 * 119.99936 * 0.02562 * 6 4 2 9 9 H 1.48507 * 109.47314 * 89.99854 * 8 6 4 10 10 H 1.48505 * 109.47149 * 209.99994 * 8 6 4 11 11 H 1.48499 * 109.47326 * 329.99764 * 8 6 4 12 12 N 1.46906 * 109.46834 * 240.00060 * 2 1 3 13 13 C 1.46788 * 111.13704 * 296.93738 * 12 2 1 14 14 C 1.50145 * 110.41507 * 174.11638 * 13 12 2 15 15 C 1.29818 * 123.28366 * 343.09131 * 14 13 12 16 16 C 1.50304 * 122.89592 * 0.34891 * 15 14 13 17 17 C 1.47239 * 111.00004 * 60.00091 * 12 2 1 18 18 H 1.09002 * 109.47458 * 59.99684 * 1 2 3 19 19 H 1.08998 * 109.47537 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46955 * 299.99801 * 1 2 3 21 21 H 0.96999 * 119.99533 * 179.97438 * 7 6 4 22 22 H 1.08999 * 109.15277 * 53.90048 * 13 12 2 23 23 H 1.09000 * 109.24888 * 294.39642 * 13 12 2 24 24 H 1.08002 * 118.35435 * 163.06574 * 14 13 12 25 25 H 1.08006 * 118.55215 * 180.36957 * 15 14 13 26 26 H 1.08999 * 109.43124 * 223.44962 * 16 15 14 27 27 H 1.09007 * 109.38991 * 103.57572 * 16 15 14 28 28 H 1.09002 * 109.63847 * 48.11079 * 17 12 2 29 29 H 1.08999 * 109.63658 * 287.70548 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8597 3.5565 8 14 0.6249 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9761 1.9951 3.9068 11 1 0.8472 2.1765 1.4920 12 7 2.0196 -0.6925 -1.1995 13 6 1.6113 -2.1025 -1.2005 14 6 1.9950 -2.7580 -2.4956 15 6 2.3052 -2.0927 -3.5663 16 6 2.3196 -0.5907 -3.6186 17 6 1.5475 -0.0248 -2.4239 18 1 -0.3634 0.5139 -0.8899 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.9032 -0.5280 4.4375 22 1 0.5305 -2.1618 -1.0723 23 1 2.1014 -2.6191 -0.3753 24 1 2.0144 -3.8370 -2.5383 25 1 2.5639 -2.6428 -4.4590 26 1 1.8518 -0.2555 -4.5443 27 1 3.3503 -0.2373 -3.5845 28 1 1.7250 1.0480 -2.3479 29 1 0.4816 -0.2113 -2.5551 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147698269.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:05 Heat of formation + Delta-G solvation = 6.571010 kcal Electronic energy + Delta-G solvation = -11238.375007 eV Core-core repulsion = 9354.159650 eV Total energy + Delta-G solvation = -1884.215358 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.13164 -36.13237 -34.02372 -31.67603 -30.70715 -27.28581 -25.52593 -23.96960 -21.67955 -18.94736 -18.11943 -17.48144 -16.53222 -15.95751 -15.31624 -14.92263 -14.77987 -14.25362 -13.87950 -13.68439 -13.30977 -12.88232 -12.69133 -12.50790 -12.09187 -11.89011 -11.47104 -11.13694 -10.98915 -10.77062 -9.82574 -8.93675 -8.28543 -6.31905 1.28992 1.35025 1.45311 1.46170 2.31425 3.05098 3.27211 3.95610 4.13402 4.37017 4.42939 4.46478 4.57575 4.62450 4.66110 4.76256 4.80393 5.02243 5.07046 5.19475 5.27276 5.42408 5.61695 5.67814 6.04181 6.11263 6.44080 6.71573 6.75184 7.33132 8.88124 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.066441 B = 0.013391 C = 0.012057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.322824 B = 2090.492163 C = 2321.754378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.181 3.819 3 H 0.036 0.964 4 C -0.508 4.508 5 H 0.039 0.961 6 C 0.011 3.989 7 N -0.949 5.949 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.297 1.297 11 H -0.248 1.248 12 N -0.535 5.535 13 C 0.088 3.912 14 C -0.173 4.173 15 C -0.149 4.149 16 C -0.083 4.083 17 C 0.041 3.959 18 H 0.062 0.938 19 H 0.050 0.950 20 H 0.038 0.962 21 H 0.266 0.734 22 H 0.036 0.964 23 H 0.057 0.943 24 H 0.120 0.880 25 H 0.129 0.871 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.644 1.696 -13.533 14.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.073 3.927 3 H 0.054 0.946 4 C -0.546 4.546 5 H 0.057 0.943 6 C -0.186 4.186 7 N -0.590 5.590 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.225 1.225 11 H -0.172 1.172 12 N -0.259 5.259 13 C -0.040 4.040 14 C -0.191 4.191 15 C -0.167 4.167 16 C -0.120 4.120 17 C -0.087 4.087 18 H 0.081 0.919 19 H 0.069 0.931 20 H 0.056 0.944 21 H 0.075 0.925 22 H 0.054 0.946 23 H 0.075 0.925 24 H 0.138 0.862 25 H 0.147 0.853 26 H 0.117 0.883 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.111 1.710 -13.355 13.819 hybrid contribution -1.145 0.227 0.941 1.499 sum -4.256 1.937 -12.414 13.265 Atomic orbital electron populations 1.22685 0.99949 1.01104 1.00127 1.19622 0.89994 0.94617 0.88509 0.94580 1.21227 1.30621 1.12625 0.90135 0.94285 1.25793 0.97461 1.00010 0.95319 1.70039 1.47839 1.42533 0.98551 0.85818 0.78906 0.80043 0.77376 1.19473 1.22512 1.17192 1.62409 1.59338 1.02068 1.02037 1.20769 0.97525 0.89369 0.96306 1.22383 1.02476 1.00161 0.94070 1.22400 0.99805 0.96447 0.98097 1.20585 1.01095 0.92866 0.97454 1.22312 0.97085 0.98832 0.90426 0.91911 0.93086 0.94388 0.92532 0.94613 0.92477 0.86218 0.85277 0.88269 0.90528 0.90705 0.94737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.62 7.99 71.98 0.58 -7.04 15 2 C 0.18 8.62 1.98 44.17 0.09 8.71 15 3 H 0.04 1.76 7.17 -2.39 -0.02 1.74 15 4 C -0.51 -29.44 8.57 25.60 0.22 -29.23 15 5 H 0.04 2.54 6.71 -2.91 -0.02 2.52 15 6 C 0.01 0.66 5.45 84.66 0.46 1.12 15 7 N -0.95 -59.98 13.96 21.45 0.30 -59.68 15 8 Si 0.95 45.25 24.37 68.60 1.67 46.92 15 9 H -0.27 -12.16 6.87 99.48 0.68 -11.48 15 10 H -0.30 -14.09 7.11 99.48 0.71 -13.38 15 11 H -0.25 -10.90 6.53 99.48 0.65 -10.25 15 12 N -0.53 -22.57 4.74 -880.19 -4.17 -26.74 15 13 C 0.09 3.56 5.02 85.40 0.43 3.99 15 14 C -0.17 -5.49 9.93 26.69 0.26 -5.22 15 15 C -0.15 -4.02 9.94 26.74 0.27 -3.76 15 16 C -0.08 -2.16 6.32 29.75 0.19 -1.98 15 17 C 0.04 1.35 4.78 86.27 0.41 1.76 15 18 H 0.06 2.23 6.69 -2.39 -0.02 2.22 15 19 H 0.05 2.17 6.35 -2.39 -0.02 2.16 15 20 H 0.04 1.65 3.27 -2.39 -0.01 1.64 15 21 H 0.27 15.71 8.31 -92.71 -0.77 14.94 15 22 H 0.04 1.46 6.08 -2.39 -0.01 1.44 15 23 H 0.06 2.70 6.49 -2.39 -0.02 2.68 15 24 H 0.12 3.29 8.06 -2.91 -0.02 3.26 15 25 H 0.13 2.67 8.06 -2.91 -0.02 2.65 15 26 H 0.10 1.94 8.14 -2.39 -0.02 1.92 15 27 H 0.08 2.03 8.14 -2.38 -0.02 2.01 15 28 H 0.07 2.32 8.04 -2.39 -0.02 2.30 15 29 H 0.03 1.09 6.98 -2.39 -0.02 1.07 15 Total: -1.00 -65.45 222.05 1.75 -63.70 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.04 Total: 7.44 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 2.90 Total: -31.64 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -3.87 Total: -86.42 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.67 Total: 46.92 kcal Total: -65.45 1.75 -63.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147698269.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.271 kcal (2) G-P(sol) polarization free energy of solvation -65.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds