Wall clock time and date at job start Mon Mar 30 2020 02:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47372 * 2 1 4 4 C 1.50702 * 109.46909 * 239.99692 * 2 1 3 5 5 H 1.08004 * 120.00288 * 274.89891 * 4 2 1 6 6 C 1.37880 * 120.00129 * 94.90811 * 4 2 1 7 7 N 1.31514 * 120.00307 * 183.81354 * 6 4 2 8 8 Si 1.86800 * 119.99506 * 3.80680 * 6 4 2 9 9 H 1.48503 * 109.47194 * 84.43281 * 8 6 4 10 10 H 1.48507 * 109.46813 * 204.42566 * 8 6 4 11 11 H 1.48496 * 109.47396 * 324.42609 * 8 6 4 12 12 N 1.46903 * 109.47341 * 120.00115 * 2 1 3 13 13 C 1.46836 * 111.00497 * 176.04328 * 12 2 1 14 14 C 1.50139 * 110.27652 * 174.31368 * 13 12 2 15 15 C 1.29822 * 123.28425 * 342.96538 * 14 13 12 16 16 C 1.50308 * 122.89339 * 0.38224 * 15 14 13 17 17 C 1.47240 * 110.99528 * 298.97562 * 12 2 1 18 18 H 1.09002 * 109.47218 * 306.67873 * 1 2 3 19 19 H 1.09005 * 109.47139 * 66.67425 * 1 2 3 20 20 H 1.08998 * 109.47637 * 186.67476 * 1 2 3 21 21 H 0.96996 * 119.99636 * 179.97438 * 7 6 4 22 22 H 1.09001 * 109.33727 * 294.56128 * 13 12 2 23 23 H 1.09006 * 109.33713 * 54.06571 * 13 12 2 24 24 H 1.08003 * 118.35691 * 162.95371 * 14 13 12 25 25 H 1.07997 * 118.55226 * 180.35052 * 15 14 13 26 26 H 1.09006 * 109.43228 * 103.54658 * 16 15 14 27 27 H 1.08997 * 109.42844 * 223.44791 * 16 15 14 28 28 H 1.08997 * 109.63718 * 287.49706 * 17 12 2 29 29 H 1.08999 * 109.63814 * 48.11234 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.1369 -1.7854 -1.2285 6 6 2.3583 0.0118 -2.3588 7 7 2.7249 -0.6131 -3.4564 8 14 2.2793 1.8778 -2.3283 9 1 3.5470 2.4180 -1.7748 10 1 2.0854 2.3877 -3.7096 11 1 1.1427 2.3113 -1.4766 12 7 2.0197 -0.6925 1.1994 13 6 3.4844 -0.7946 1.1871 14 6 3.9762 -1.3789 2.4797 15 6 3.2531 -1.4364 3.5563 16 6 1.8395 -0.9293 3.6182 17 6 1.5677 -0.0108 2.4237 18 1 -0.3634 0.6139 0.8242 19 1 -0.3634 0.4069 -0.9437 20 1 -0.3634 -1.0206 0.1194 21 1 2.9539 -0.1049 -4.2502 22 1 3.7947 -1.4342 0.3607 23 1 3.9143 0.1981 1.0530 24 1 4.9819 -1.7711 2.5156 25 1 3.6861 -1.8681 4.4466 26 1 1.1500 -1.7732 3.5913 27 1 1.6944 -0.3719 4.5436 28 1 2.1162 0.9230 2.5467 29 1 0.4994 0.1947 2.3555 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147698473.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:08 Heat of formation + Delta-G solvation = 17.428552 kcal Electronic energy + Delta-G solvation = -11192.296498 eV Core-core repulsion = 9308.551959 eV Total energy + Delta-G solvation = -1883.744539 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.37255 -34.30432 -31.99210 -30.28400 -29.18879 -25.33732 -23.51249 -22.40218 -19.56789 -17.29921 -16.83038 -15.92227 -14.39381 -14.13869 -13.67734 -13.40386 -12.79590 -12.50846 -12.32063 -11.77980 -11.61732 -11.07817 -10.89933 -10.67805 -10.64186 -10.08899 -9.78310 -9.68641 -9.02376 -8.60527 -8.50136 -7.27684 -6.08872 -4.07491 2.74006 3.25127 3.34250 3.36212 4.39181 4.83294 5.25017 5.27948 5.42091 5.74957 5.86532 5.99081 6.05434 6.24821 6.33179 6.44651 6.57524 6.59436 6.66954 6.82486 6.87847 7.02014 7.31432 7.41162 7.64273 8.05893 8.14888 8.67265 9.01818 9.54923 11.04177 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.054189 B = 0.014055 C = 0.012946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.581465 B = 1991.665501 C = 2162.308247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.177 3.823 3 H 0.000 1.000 4 C -0.502 4.502 5 H 0.081 0.919 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.872 3.128 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.266 1.266 12 N -0.522 5.522 13 C 0.091 3.909 14 C -0.146 4.146 15 C -0.168 4.168 16 C -0.081 4.081 17 C 0.041 3.959 18 H 0.021 0.979 19 H 0.049 0.951 20 H 0.054 0.946 21 H 0.264 0.736 22 H 0.099 0.901 23 H 0.033 0.967 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.022 0.978 29 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.479 1.987 10.749 10.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.070 3.930 3 H 0.017 0.983 4 C -0.540 4.540 5 H 0.099 0.901 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.699 3.301 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.191 1.191 12 N -0.247 5.247 13 C -0.036 4.036 14 C -0.164 4.164 15 C -0.186 4.186 16 C -0.118 4.118 17 C -0.088 4.088 18 H 0.040 0.960 19 H 0.068 0.932 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.117 0.883 23 H 0.051 0.949 24 H 0.119 0.881 25 H 0.113 0.887 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.623 1.536 10.532 10.661 hybrid contribution 0.455 1.809 -0.095 1.868 sum -0.167 3.345 10.437 10.961 Atomic orbital electron populations 1.21967 0.97815 1.00430 0.98807 1.19757 0.92316 0.92060 0.88855 0.98258 1.20907 1.43073 0.95942 0.94119 0.90092 1.24996 0.94695 0.97909 0.95442 1.69889 1.46066 1.35639 1.01963 0.86949 0.79012 0.86943 0.77170 1.20386 1.21387 1.19116 1.62555 1.09132 1.51397 1.01593 1.20799 0.88443 0.99118 0.95282 1.22459 0.99121 0.99630 0.95206 1.22036 0.96463 1.02526 0.97611 1.20481 0.94792 0.99276 0.97284 1.22251 1.00441 0.94596 0.91471 0.95983 0.93196 0.92727 0.92616 0.88273 0.94926 0.88080 0.88722 0.90767 0.92041 0.95978 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.81 37.15 0.33 -2.55 15 2 C 0.18 4.26 1.67 -68.86 -0.12 4.14 15 3 H 0.00 0.00 5.36 -51.93 -0.28 -0.28 15 4 C -0.50 -14.00 7.56 -34.44 -0.26 -14.26 15 5 H 0.08 2.50 8.04 -52.48 -0.42 2.07 15 6 C 0.07 2.04 5.47 -17.82 -0.10 1.95 15 7 N -0.90 -27.16 13.96 55.43 0.77 -26.39 15 8 Si 0.87 21.55 26.95 -169.99 -4.58 16.97 15 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 11 H -0.27 -6.35 6.88 56.52 0.39 -5.97 15 12 N -0.52 -11.31 4.57 -229.50 -1.05 -12.36 15 13 C 0.09 1.89 5.19 -5.28 -0.03 1.87 15 14 C -0.15 -2.50 9.92 -35.97 -0.36 -2.86 15 15 C -0.17 -2.63 9.93 -35.88 -0.36 -2.99 15 16 C -0.08 -1.24 6.32 -28.01 -0.18 -1.42 15 17 C 0.04 0.74 5.43 -3.58 -0.02 0.72 15 18 H 0.02 0.41 6.54 -51.93 -0.34 0.07 15 19 H 0.05 1.11 8.14 -51.93 -0.42 0.69 15 20 H 0.05 1.17 8.14 -51.93 -0.42 0.75 15 21 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 22 H 0.10 2.27 7.17 -51.93 -0.37 1.89 15 23 H 0.03 0.70 8.12 -51.93 -0.42 0.28 15 24 H 0.10 1.51 8.06 -52.48 -0.42 1.09 15 25 H 0.09 1.25 8.06 -52.49 -0.42 0.83 15 26 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 28 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 15 29 H 0.07 1.28 5.96 -51.93 -0.31 0.97 15 LS Contribution 233.13 15.07 3.51 3.51 Total: -1.00 -29.42 233.13 -6.67 -36.09 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -4.25 Total: -2.42 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -1.08 Total: -15.41 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: -0.28 Total: -38.75 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.58 Total: 16.97 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.42 -6.67 -36.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147698473.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.523 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds