Wall clock time and date at job start Mon Mar 30 2020 02:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47372 * 2 1 4 4 C 1.50702 * 109.46909 * 239.99692 * 2 1 3 5 5 H 1.08004 * 120.00288 * 274.89891 * 4 2 1 6 6 C 1.37880 * 120.00129 * 94.90811 * 4 2 1 7 7 N 1.31514 * 120.00307 * 183.81354 * 6 4 2 8 8 Si 1.86800 * 119.99506 * 3.80680 * 6 4 2 9 9 H 1.48503 * 109.47194 * 84.43281 * 8 6 4 10 10 H 1.48507 * 109.46813 * 204.42566 * 8 6 4 11 11 H 1.48496 * 109.47396 * 324.42609 * 8 6 4 12 12 N 1.46903 * 109.47341 * 120.00115 * 2 1 3 13 13 C 1.46836 * 111.00497 * 176.04328 * 12 2 1 14 14 C 1.50139 * 110.27652 * 174.31368 * 13 12 2 15 15 C 1.29822 * 123.28425 * 342.96538 * 14 13 12 16 16 C 1.50308 * 122.89339 * 0.38224 * 15 14 13 17 17 C 1.47240 * 110.99528 * 298.97562 * 12 2 1 18 18 H 1.09002 * 109.47218 * 306.67873 * 1 2 3 19 19 H 1.09005 * 109.47139 * 66.67425 * 1 2 3 20 20 H 1.08998 * 109.47637 * 186.67476 * 1 2 3 21 21 H 0.96996 * 119.99636 * 179.97438 * 7 6 4 22 22 H 1.09001 * 109.33727 * 294.56128 * 13 12 2 23 23 H 1.09006 * 109.33713 * 54.06571 * 13 12 2 24 24 H 1.08003 * 118.35691 * 162.95371 * 14 13 12 25 25 H 1.07997 * 118.55226 * 180.35052 * 15 14 13 26 26 H 1.09006 * 109.43228 * 103.54658 * 16 15 14 27 27 H 1.08997 * 109.42844 * 223.44791 * 16 15 14 28 28 H 1.08997 * 109.63718 * 287.49706 * 17 12 2 29 29 H 1.08999 * 109.63814 * 48.11234 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.1369 -1.7854 -1.2285 6 6 2.3583 0.0118 -2.3588 7 7 2.7249 -0.6131 -3.4564 8 14 2.2793 1.8778 -2.3283 9 1 3.5470 2.4180 -1.7748 10 1 2.0854 2.3877 -3.7096 11 1 1.1427 2.3113 -1.4766 12 7 2.0197 -0.6925 1.1994 13 6 3.4844 -0.7946 1.1871 14 6 3.9762 -1.3789 2.4797 15 6 3.2531 -1.4364 3.5563 16 6 1.8395 -0.9293 3.6182 17 6 1.5677 -0.0108 2.4237 18 1 -0.3634 0.6139 0.8242 19 1 -0.3634 0.4069 -0.9437 20 1 -0.3634 -1.0206 0.1194 21 1 2.9539 -0.1049 -4.2502 22 1 3.7947 -1.4342 0.3607 23 1 3.9143 0.1981 1.0530 24 1 4.9819 -1.7711 2.5156 25 1 3.6861 -1.8681 4.4466 26 1 1.1500 -1.7732 3.5913 27 1 1.6944 -0.3719 4.5436 28 1 2.1162 0.9230 2.5467 29 1 0.4994 0.1947 2.3555 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147698473.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:08 Heat of formation + Delta-G solvation = -2.479103 kcal Electronic energy + Delta-G solvation = -11193.159759 eV Core-core repulsion = 9308.551959 eV Total energy + Delta-G solvation = -1884.607800 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.92875 -36.02547 -34.01326 -31.70124 -30.89851 -27.34044 -25.08508 -23.89804 -21.40662 -19.15611 -18.49463 -17.49723 -16.29239 -15.62209 -15.28299 -15.03250 -14.60903 -14.34819 -13.98425 -13.21326 -13.08021 -12.90323 -12.68291 -12.51490 -12.24265 -11.84580 -11.80072 -11.16186 -10.96544 -10.75622 -9.84105 -8.98543 -8.30329 -6.33250 1.29170 1.30985 1.41719 1.45522 2.30582 2.99820 3.31813 3.96340 4.12248 4.38954 4.48448 4.53852 4.61819 4.67741 4.76025 4.82975 4.97518 5.06159 5.13253 5.20889 5.28281 5.46200 5.65597 5.70856 6.04519 6.15587 6.41602 6.70546 6.76646 7.32860 8.86731 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.054189 B = 0.014055 C = 0.012946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.581465 B = 1991.665501 C = 2162.308247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.176 3.824 3 H -0.004 1.004 4 C -0.500 4.500 5 H 0.033 0.967 6 C 0.015 3.985 7 N -0.946 5.946 8 Si 0.936 3.064 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.246 1.246 12 N -0.535 5.535 13 C 0.094 3.906 14 C -0.173 4.173 15 C -0.148 4.148 16 C -0.082 4.082 17 C 0.036 3.964 18 H 0.056 0.944 19 H 0.041 0.959 20 H 0.050 0.950 21 H 0.266 0.734 22 H 0.060 0.940 23 H 0.019 0.981 24 H 0.120 0.880 25 H 0.130 0.870 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.023 0.977 29 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.219 3.291 13.383 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.069 3.931 3 H 0.013 0.987 4 C -0.539 4.539 5 H 0.051 0.949 6 C -0.183 4.183 7 N -0.586 5.586 8 Si 0.760 3.240 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.170 1.170 12 N -0.261 5.261 13 C -0.034 4.034 14 C -0.191 4.191 15 C -0.166 4.166 16 C -0.119 4.119 17 C -0.092 4.092 18 H 0.075 0.925 19 H 0.060 0.940 20 H 0.069 0.931 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.037 0.963 24 H 0.137 0.863 25 H 0.148 0.852 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.041 0.959 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.373 2.835 13.195 13.566 hybrid contribution 0.675 1.299 -0.847 1.692 sum -0.697 4.135 12.348 13.040 Atomic orbital electron populations 1.21857 0.95824 1.00968 0.99832 1.19673 0.93782 0.91274 0.88369 0.98670 1.21042 1.42652 0.93991 0.96179 0.94855 1.25814 0.94493 1.03080 0.94895 1.70038 1.47965 1.37745 1.02894 0.85912 0.79769 0.80652 0.77669 1.19851 1.20894 1.17008 1.62463 1.09529 1.51824 1.02241 1.20647 0.88240 0.97950 0.96514 1.22369 1.00728 1.02026 0.94015 1.22421 0.96223 1.00019 0.97948 1.20584 0.94612 0.99315 0.97367 1.22426 1.00953 0.95126 0.90665 0.92492 0.93994 0.93074 0.92491 0.92193 0.96306 0.86258 0.85188 0.90245 0.88362 0.95887 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.31 8.81 71.98 0.63 -4.68 15 2 C 0.18 8.43 1.67 44.17 0.07 8.51 15 3 H 0.00 -0.20 5.36 -2.39 -0.01 -0.22 15 4 C -0.50 -28.91 7.56 25.60 0.19 -28.71 15 5 H 0.03 2.19 8.04 -2.91 -0.02 2.16 15 6 C 0.01 0.86 5.47 84.66 0.46 1.32 15 7 N -0.95 -59.40 13.96 21.45 0.30 -59.11 15 8 Si 0.94 44.60 26.95 68.60 1.85 46.45 15 9 H -0.27 -12.71 7.11 99.48 0.71 -12.01 15 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 15 11 H -0.25 -10.88 6.88 99.48 0.68 -10.19 15 12 N -0.54 -22.88 4.57 -880.02 -4.02 -26.90 15 13 C 0.09 3.99 5.19 85.39 0.44 4.43 15 14 C -0.17 -5.68 9.92 26.68 0.26 -5.42 15 15 C -0.15 -4.07 9.93 26.74 0.27 -3.81 15 16 C -0.08 -2.16 6.32 29.76 0.19 -1.97 15 17 C 0.04 1.20 5.43 86.28 0.47 1.67 15 18 H 0.06 1.97 6.54 -2.39 -0.02 1.96 15 19 H 0.04 1.79 8.14 -2.38 -0.02 1.77 15 20 H 0.05 2.14 8.14 -2.39 -0.02 2.12 15 21 H 0.27 15.63 8.31 -92.71 -0.77 14.86 15 22 H 0.06 2.92 7.17 -2.39 -0.02 2.91 15 23 H 0.02 0.83 8.12 -2.38 -0.02 0.81 15 24 H 0.12 3.40 8.06 -2.91 -0.02 3.38 15 25 H 0.13 2.74 8.06 -2.91 -0.02 2.72 15 26 H 0.08 2.09 8.14 -2.38 -0.02 2.07 15 27 H 0.10 1.96 8.14 -2.39 -0.02 1.94 15 28 H 0.02 0.77 8.08 -2.39 -0.02 0.75 15 29 H 0.09 2.62 5.96 -2.39 -0.01 2.61 15 Total: -1.00 -65.29 233.13 2.20 -63.09 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 1.08 Total: 5.12 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 2.99 Total: -28.65 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -3.72 Total: -86.01 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.85 Total: 46.45 kcal Total: -65.29 2.20 -63.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147698473.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.606 kcal (2) G-P(sol) polarization free energy of solvation -65.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds