Wall clock time and date at job start Mon Mar 30 2020 02:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31124 * 1 3 3 Si 1.86807 * 119.99801 * 2 1 4 4 H 1.48502 * 109.47190 * 240.00176 * 3 2 1 5 5 H 1.48496 * 109.47274 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47286 * 120.00303 * 3 2 1 7 7 C 1.39254 * 120.00474 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00186 * 179.97438 * 7 2 1 9 9 N 1.37030 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.36459 * 126.56147 * 0.35722 * 9 7 2 11 11 C 1.35551 * 107.07309 * 180.12005 * 10 9 7 12 12 N 1.33134 * 108.55681 * 359.57580 * 11 10 9 13 13 C 1.31817 * 109.31414 * 0.26844 * 12 11 10 14 14 C 1.46950 * 125.90649 * 179.97438 * 13 12 11 15 15 O 1.21575 * 119.99751 * 180.02562 * 14 13 12 16 16 O 1.34855 * 120.00374 * 0.02562 * 14 13 12 17 17 H 0.97003 * 120.00602 * 359.97438 * 1 2 3 18 18 H 1.07999 * 126.46750 * 359.97438 * 10 9 7 19 19 H 1.08002 * 125.72550 * 179.84787 * 11 10 9 20 20 H 0.96699 * 117.00655 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3112 0.0000 0.0000 3 14 2.2452 1.6178 0.0000 4 1 3.0990 1.6966 -1.2125 5 1 1.2802 2.7465 0.0006 6 1 3.0990 1.6965 1.2124 7 6 2.0076 -1.2059 -0.0005 8 1 3.0876 -1.2059 -0.0010 9 7 1.3225 -2.3927 -0.0005 10 6 -0.0331 -2.5487 -0.0069 11 6 -0.2804 -3.8814 -0.0016 12 7 0.8833 -4.5282 -0.0016 13 6 1.8687 -3.6527 -0.0009 14 6 3.3035 -3.9702 -0.0002 15 8 4.1245 -3.0734 0.0009 16 8 3.7097 -5.2561 -0.0006 17 1 -0.4851 0.8400 0.0004 18 1 -0.7701 -1.7592 -0.0125 19 1 -1.2575 -4.3415 -0.0021 20 1 4.6635 -5.4153 0.0003 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168752475.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:44 Heat of formation + Delta-G solvation = -58.772411 kcal Electronic energy + Delta-G solvation = -10675.311072 eV Core-core repulsion = 8451.170111 eV Total energy + Delta-G solvation = -2224.140961 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.61975 -40.57477 -37.04677 -36.16499 -33.12102 -30.46374 -27.60758 -25.10314 -22.37640 -21.62205 -20.01874 -18.84746 -17.79344 -16.85871 -16.67589 -16.02172 -15.31941 -14.85822 -14.30736 -14.02928 -13.77646 -13.07635 -13.06999 -12.53855 -12.16253 -11.78630 -11.58183 -10.72149 -10.61334 -9.14250 -8.85247 -6.73052 0.49237 1.32213 1.39283 1.48357 1.83243 1.94938 2.13377 2.56382 2.86419 3.26158 4.05940 4.65750 4.76830 4.92371 5.25689 5.40882 5.56051 6.13248 6.27869 6.55522 6.95989 7.17922 7.47724 8.10016 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.047447 B = 0.017241 C = 0.012702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.985874 B = 1623.689681 C = 2203.833177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.007 3.993 3 Si 1.026 2.974 4 H -0.260 1.260 5 H -0.253 1.253 6 H -0.260 1.260 7 C -0.354 4.354 8 H 0.127 0.873 9 N -0.217 5.217 10 C -0.085 4.085 11 C -0.062 4.062 12 N -0.476 5.476 13 C -0.021 4.021 14 C 0.583 3.417 15 O -0.554 6.554 16 O -0.492 6.492 17 H 0.300 0.700 18 H 0.206 0.794 19 H 0.192 0.808 20 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.006 1.035 -0.012 2.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.203 4.203 3 Si 0.843 3.157 4 H -0.185 1.185 5 H -0.176 1.176 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.145 0.855 9 N 0.118 4.882 10 C -0.233 4.233 11 C -0.224 4.224 12 N -0.200 5.200 13 C -0.263 4.263 14 C 0.430 3.570 15 O -0.446 6.446 16 O -0.304 6.304 17 H 0.112 0.888 18 H 0.222 0.778 19 H 0.209 0.791 20 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 2.024 0.671 -0.009 2.132 hybrid contribution 0.613 1.188 0.002 1.337 sum 2.637 1.860 -0.007 3.227 Atomic orbital electron populations 1.69601 1.07876 1.31429 1.37616 1.26877 0.96783 1.04151 0.92525 0.84532 0.77919 0.73116 0.80104 1.18455 1.17611 1.18473 1.21126 0.94857 0.81848 1.50736 0.85539 1.41651 1.06655 1.05186 1.34708 1.24229 0.84913 0.99728 1.14433 1.22712 0.97144 0.90905 1.11616 1.69936 0.98553 1.32431 1.19111 1.20923 0.92708 0.82330 1.30304 1.18524 0.85806 0.80693 0.71961 1.90791 1.54819 1.48520 1.50490 1.84596 1.33976 1.26104 1.85704 0.88843 0.77816 0.79085 0.70926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -40.14 10.18 21.70 0.22 -39.92 14 2 C 0.01 0.36 5.48 85.04 0.47 0.82 14 3 Si 1.03 37.09 29.55 68.60 2.03 39.12 14 4 H -0.26 -9.31 7.11 99.48 0.71 -8.60 14 5 H -0.25 -8.22 7.11 99.48 0.71 -7.51 14 6 H -0.26 -9.32 7.11 99.48 0.71 -8.61 14 7 C -0.35 -19.29 9.82 84.13 0.83 -18.46 14 8 H 0.13 6.99 5.82 -2.91 -0.02 6.97 14 9 N -0.22 -12.10 2.92 -342.50 -1.00 -13.10 14 10 C -0.09 -4.43 10.40 83.35 0.87 -3.56 14 11 C -0.06 -2.99 11.84 83.87 0.99 -2.00 14 12 N -0.48 -24.90 11.25 -189.31 -2.13 -27.03 14 13 C -0.02 -1.15 7.78 135.86 1.06 -0.10 14 14 C 0.58 28.05 8.32 70.10 0.58 28.63 14 15 O -0.55 -27.90 15.43 19.59 0.30 -27.60 14 16 O -0.49 -18.48 13.43 -57.68 -0.77 -19.25 14 17 H 0.30 12.75 8.30 -92.71 -0.77 11.98 14 18 H 0.21 10.34 5.56 -2.91 -0.02 10.33 14 19 H 0.19 7.37 8.06 -2.91 -0.02 7.35 14 20 H 0.43 10.19 9.11 -74.06 -0.67 9.52 14 Total: -1.00 -65.07 194.56 4.06 -61.02 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.62 Total: 21.43 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 4.79 Total: 5.34 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -2.91 Total: -80.05 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -0.47 Total: -46.85 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -65.07 4.06 -61.02 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168752475.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.244 kcal (2) G-P(sol) polarization free energy of solvation -65.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds