Wall clock time and date at job start Mon Mar 30 2020 02:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86797 * 120.00177 * 2 1 4 4 H 1.48503 * 109.47157 * 270.00128 * 3 2 1 5 5 H 1.48499 * 109.47282 * 30.00055 * 3 2 1 6 6 H 1.48503 * 109.47341 * 150.00100 * 3 2 1 7 7 C 1.40120 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99405 * 179.97438 * 7 2 1 9 9 C 1.46181 * 120.00099 * 0.02562 * 7 2 1 10 10 O 1.21746 * 120.00044 * 359.97438 * 9 7 2 11 11 N 1.34781 * 119.99861 * 179.97438 * 9 7 2 12 12 C 1.39846 * 119.99858 * 179.97438 * 11 9 7 13 13 C 1.40010 * 126.72969 * 359.97438 * 12 11 9 14 14 N 1.30874 * 108.24318 * 180.02562 * 13 12 11 15 15 N 1.28699 * 109.75062 * 0.02562 * 14 13 12 16 16 H 0.97003 * 125.66139 * 179.97438 * 15 14 13 17 17 N 1.31965 * 126.72923 * 180.02562 * 12 11 9 18 18 H 0.97002 * 119.99333 * 0.02562 * 1 2 3 19 19 H 0.97001 * 120.00239 * 359.97438 * 11 9 7 20 20 H 1.08002 * 125.88120 * 0.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0464 -1.4001 5 1 1.4380 2.6527 0.7000 6 1 3.5381 1.4401 0.7000 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2135 0.0001 9 6 1.2760 -2.4795 0.0005 10 8 0.0586 -2.4794 0.0005 11 7 1.9499 -3.6467 0.0005 12 6 1.2506 -4.8578 0.0011 13 6 -0.1398 -5.0218 0.0022 14 7 -0.4011 -6.3042 0.0029 15 7 0.6990 -6.9722 0.0030 16 1 0.7733 -7.9393 0.0038 17 7 1.7720 -6.0701 0.0016 18 1 -0.4849 0.8401 -0.0004 19 1 2.9199 -3.6467 0.0002 20 1 -0.8710 -4.2269 0.0023 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170182220.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:23 Heat of formation + Delta-G solvation = 63.408121 kcal Electronic energy + Delta-G solvation = -10422.731236 eV Core-core repulsion = 8236.181171 eV Total energy + Delta-G solvation = -2186.550065 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.054 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.53833 -37.69443 -33.80416 -32.60429 -30.68143 -30.13962 -26.56143 -22.28935 -21.92580 -19.64519 -17.81055 -17.02799 -15.55612 -15.41755 -15.05918 -14.36458 -13.51870 -12.91437 -12.67835 -11.41349 -11.20235 -10.96612 -10.73102 -10.39983 -10.37543 -10.21513 -9.10658 -8.92485 -7.94459 -7.57254 -6.44691 -4.91982 2.22337 3.03237 3.04232 3.13515 3.17334 3.32570 3.94559 4.39400 4.40092 5.29542 5.55081 5.91083 6.43525 6.86852 7.22140 7.52388 7.69823 7.82692 8.04418 8.63675 8.76487 9.12814 10.23606 10.45907 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.119471 B = 0.010404 C = 0.009603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 234.311199 B = 2690.661423 C = 2915.130930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.086 3.914 3 Si 0.917 3.083 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.077 0.923 9 C 0.547 3.453 10 O -0.556 6.556 11 N -0.648 5.648 12 C 0.305 3.695 13 C -0.035 4.035 14 N -0.248 5.248 15 N -0.346 5.346 16 H 0.458 0.542 17 N -0.354 5.354 18 H 0.274 0.726 19 H 0.402 0.598 20 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.225 -4.330 0.001 5.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.136 4.136 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.095 0.905 9 C 0.354 3.646 10 O -0.436 6.436 11 N -0.299 5.299 12 C 0.043 3.957 13 C -0.226 4.226 14 N -0.088 5.088 15 N -0.178 5.178 16 H 0.308 0.692 17 N -0.198 5.198 18 H 0.085 0.915 19 H 0.235 0.765 20 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 2.307 -5.385 0.007 5.858 hybrid contribution 0.961 1.057 -0.009 1.429 sum 3.268 -4.328 -0.002 5.423 Atomic orbital electron populations 1.69971 1.07182 1.28126 1.33026 1.25753 0.94783 1.00610 0.92452 0.86202 0.80088 0.80523 0.79066 1.19498 1.20224 1.18672 1.20760 0.93994 0.88239 1.53605 0.90528 1.18508 0.87467 0.81397 0.77252 1.90525 1.13699 1.85161 1.54234 1.43695 1.09728 1.01138 1.75305 1.20488 0.92220 0.87489 0.95473 1.25257 0.95946 0.92186 1.09197 1.73252 1.14226 1.06890 1.14409 1.48207 0.99089 1.09149 1.61343 0.69161 1.77997 1.11224 0.98007 1.32615 0.91486 0.76450 0.76830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.93 11.82 55.55 0.66 -20.27 14 2 C 0.09 2.22 5.50 -17.35 -0.10 2.12 14 3 Si 0.92 18.71 29.56 -169.99 -5.02 13.69 14 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 14 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 14 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 14 7 C -0.53 -13.82 9.53 -35.69 -0.34 -14.16 14 8 H 0.08 1.80 7.85 -52.48 -0.41 1.39 14 9 C 0.55 14.60 7.71 -13.07 -0.10 14.50 14 10 O -0.56 -16.36 12.22 5.15 0.06 -16.30 14 11 N -0.65 -14.65 5.43 -12.47 -0.07 -14.72 14 12 C 0.30 6.76 8.18 -154.23 -1.26 5.50 14 13 C -0.04 -0.78 10.85 -17.30 -0.19 -0.97 14 14 N -0.25 -4.85 12.23 30.66 0.37 -4.48 14 15 N -0.35 -5.96 8.32 60.35 0.50 -5.46 14 16 H 0.46 5.67 8.96 -332.02 -2.98 2.70 14 17 N -0.35 -7.04 12.84 31.42 0.40 -6.64 14 18 H 0.27 6.87 8.29 -40.82 -0.34 6.53 14 19 H 0.40 7.87 8.80 -40.82 -0.36 7.51 14 20 H 0.22 5.12 5.97 -52.49 -0.31 4.81 14 LS Contribution 195.38 15.07 2.94 2.94 Total: -1.00 -30.94 195.38 -5.33 -36.26 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -3.19 Total: 7.98 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -1.99 Total: 6.99 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 1.87 Total: -51.57 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.06 Total: -16.30 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 2.94 Total: 2.94 kcal Total: -30.94 -5.33 -36.26 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170182220.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.671 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds