Wall clock time and date at job start Mon Mar 30 2020 02:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86797 * 120.00177 * 2 1 4 4 H 1.48503 * 109.47157 * 270.00128 * 3 2 1 5 5 H 1.48499 * 109.47282 * 30.00055 * 3 2 1 6 6 H 1.48503 * 109.47341 * 150.00100 * 3 2 1 7 7 C 1.40120 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99405 * 179.97438 * 7 2 1 9 9 C 1.46181 * 120.00099 * 0.02562 * 7 2 1 10 10 O 1.21746 * 120.00044 * 359.97438 * 9 7 2 11 11 N 1.34781 * 119.99861 * 179.97438 * 9 7 2 12 12 C 1.39846 * 119.99858 * 179.97438 * 11 9 7 13 13 C 1.40010 * 126.72969 * 359.97438 * 12 11 9 14 14 N 1.30874 * 108.24318 * 180.02562 * 13 12 11 15 15 N 1.28699 * 109.75062 * 0.02562 * 14 13 12 16 16 H 0.97003 * 125.66139 * 179.97438 * 15 14 13 17 17 N 1.31965 * 126.72923 * 180.02562 * 12 11 9 18 18 H 0.97002 * 119.99333 * 0.02562 * 1 2 3 19 19 H 0.97001 * 120.00239 * 359.97438 * 11 9 7 20 20 H 1.08002 * 125.88120 * 0.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0464 -1.4001 5 1 1.4380 2.6527 0.7000 6 1 3.5381 1.4401 0.7000 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2135 0.0001 9 6 1.2760 -2.4795 0.0005 10 8 0.0586 -2.4794 0.0005 11 7 1.9499 -3.6467 0.0005 12 6 1.2506 -4.8578 0.0011 13 6 -0.1398 -5.0218 0.0022 14 7 -0.4011 -6.3042 0.0029 15 7 0.6990 -6.9722 0.0030 16 1 0.7733 -7.9393 0.0038 17 7 1.7720 -6.0701 0.0016 18 1 -0.4849 0.8401 -0.0004 19 1 2.9199 -3.6467 0.0002 20 1 -0.8710 -4.2269 0.0023 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170182220.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:23 Heat of formation + Delta-G solvation = 39.114415 kcal Electronic energy + Delta-G solvation = -10423.784690 eV Core-core repulsion = 8236.181171 eV Total energy + Delta-G solvation = -2187.603519 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.054 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -43.20261 -39.64536 -35.67008 -34.59073 -32.38265 -31.84678 -28.52863 -23.96898 -23.76016 -21.46536 -19.60598 -18.79721 -17.47938 -17.19341 -16.72474 -16.12142 -15.24300 -14.85674 -14.58041 -13.21482 -12.82677 -12.75889 -12.61480 -12.16712 -11.99218 -11.87668 -10.94883 -10.64176 -10.00013 -9.34268 -8.37654 -6.95069 0.55676 1.41147 1.44300 1.55928 1.58988 1.65117 2.26419 2.47399 2.72085 3.55732 3.62669 4.13939 4.70607 5.12745 5.30173 5.68543 5.97895 6.10519 6.34208 6.78410 6.93143 7.31815 8.25548 8.55819 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.119471 B = 0.010404 C = 0.009603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 234.311199 B = 2690.661423 C = 2915.130930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.032 3.968 3 Si 1.003 2.997 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.553 4.553 8 H 0.099 0.901 9 C 0.533 3.467 10 O -0.593 6.593 11 N -0.641 5.641 12 C 0.285 3.715 13 C -0.064 4.064 14 N -0.230 5.230 15 N -0.310 5.310 16 H 0.481 0.519 17 N -0.341 5.341 18 H 0.280 0.720 19 H 0.415 0.585 20 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.716 -4.504 0.010 6.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.185 4.185 3 Si 0.822 3.178 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.588 4.588 8 H 0.117 0.883 9 C 0.341 3.659 10 O -0.477 6.477 11 N -0.292 5.292 12 C 0.025 3.975 13 C -0.253 4.253 14 N -0.073 5.073 15 N -0.148 5.148 16 H 0.337 0.663 17 N -0.186 5.186 18 H 0.091 0.909 19 H 0.252 0.748 20 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.837 -5.611 0.015 6.798 hybrid contribution 0.478 0.892 -0.013 1.013 sum 4.316 -4.719 0.002 6.395 Atomic orbital electron populations 1.70113 1.09443 1.29693 1.34198 1.26967 0.95601 1.04822 0.91109 0.84923 0.78765 0.74673 0.79453 1.18641 1.19824 1.17119 1.21302 0.95267 0.88553 1.53719 0.88299 1.18862 0.87291 0.82750 0.77041 1.90507 1.15264 1.86084 1.55842 1.43246 1.10240 1.00661 1.75085 1.20491 0.92217 0.87856 0.96972 1.24897 0.95907 0.92675 1.11775 1.73219 1.14538 1.05977 1.13554 1.48374 0.98035 1.10157 1.58208 0.66317 1.77970 1.11641 0.97357 1.31643 0.90940 0.74846 0.79077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.50 11.82 21.85 0.26 -45.24 14 2 C 0.03 1.66 5.50 85.33 0.47 2.13 14 3 Si 1.00 37.62 29.56 68.60 2.03 39.65 14 4 H -0.26 -9.42 7.11 99.48 0.71 -8.72 14 5 H -0.27 -9.98 7.11 99.48 0.71 -9.28 14 6 H -0.25 -8.64 7.11 99.48 0.71 -7.93 14 7 C -0.55 -28.75 9.53 24.79 0.24 -28.51 14 8 H 0.10 4.52 7.85 -2.91 -0.02 4.49 14 9 C 0.53 28.96 7.71 86.30 0.67 29.62 14 10 O -0.59 -36.20 12.22 -4.50 -0.05 -36.25 14 11 N -0.64 -28.97 5.43 -311.55 -1.69 -30.66 14 12 C 0.28 12.50 8.18 133.12 1.09 13.59 14 13 C -0.06 -2.86 10.85 85.27 0.92 -1.94 14 14 N -0.23 -8.70 12.23 -56.91 -0.70 -9.40 14 15 N -0.31 -9.87 8.32 37.02 0.31 -9.56 14 16 H 0.48 10.20 8.96 -340.43 -3.05 7.15 14 17 N -0.34 -12.88 12.84 -54.52 -0.70 -13.58 14 18 H 0.28 14.29 8.29 -92.71 -0.77 13.52 14 19 H 0.42 15.97 8.80 -92.71 -0.82 15.15 14 20 H 0.19 9.59 5.97 -2.91 -0.02 9.57 14 Total: -1.00 -66.48 195.38 0.28 -66.20 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -2.56 Total: 23.96 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 3.38 Total: 14.89 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -2.52 Total: -108.45 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.05 Total: -36.25 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Total: -66.48 0.28 -66.20 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170182220.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.316 kcal (2) G-P(sol) polarization free energy of solvation -66.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds