Wall clock time and date at job start Mon Mar 30 2020 02:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30488 * 1 3 3 Si 1.86799 * 120.00208 * 2 1 4 4 H 1.48495 * 109.47175 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46679 * 300.00381 * 3 2 1 6 6 H 1.48495 * 109.46994 * 59.99602 * 3 2 1 7 7 C 1.40624 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99901 * 180.02562 * 7 2 1 9 9 C 1.39402 * 119.99809 * 359.97438 * 7 2 1 10 10 N 1.38028 * 127.13499 * 0.34729 * 9 7 2 11 11 H 0.97008 * 126.35399 * 359.96245 * 10 9 7 12 12 C 1.35638 * 107.29803 * 180.11837 * 10 9 7 13 13 N 1.30611 * 110.01281 * 359.57357 * 12 10 9 14 14 C 1.34194 * 109.87480 * 0.27080 * 13 12 10 15 15 C 1.46951 * 126.46010 * 179.97438 * 14 13 12 16 16 O 1.21591 * 120.00169 * 180.02562 * 15 14 13 17 17 O 1.34894 * 120.00388 * 0.02562 * 15 14 13 18 18 H 0.96997 * 120.00247 * 359.97438 * 1 2 3 19 19 H 1.08002 * 124.99707 * 179.84679 * 12 10 9 20 20 H 0.96695 * 117.00516 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3049 0.0000 0.0000 3 14 2.2389 1.6177 0.0000 4 1 3.6989 1.3463 -0.0006 5 1 1.8801 2.3964 -1.2125 6 1 1.8801 2.3964 1.2124 7 6 2.0080 -1.2178 -0.0005 8 1 3.0880 -1.2178 -0.0001 9 6 1.3110 -2.4251 -0.0005 10 7 -0.0586 -2.5965 -0.0067 11 1 -0.7262 -1.8927 -0.0114 12 6 -0.2980 -3.9316 -0.0015 13 7 0.8311 -4.5881 -0.0016 14 6 1.8599 -3.7265 -0.0010 15 6 3.2882 -4.0719 -0.0004 16 8 4.1267 -3.1913 0.0006 17 8 3.6694 -5.3659 -0.0010 18 1 -0.4850 0.8400 0.0004 19 1 -1.2781 -4.3851 -0.0019 20 1 4.6198 -5.5436 -0.0010 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000199938440.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:16 Heat of formation + Delta-G solvation = -86.377033 kcal Electronic energy + Delta-G solvation = -10590.695924 eV Core-core repulsion = 8365.357936 eV Total energy + Delta-G solvation = -2225.337987 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.94393 -40.19155 -36.62925 -35.95167 -32.61662 -31.23969 -27.57834 -24.53049 -22.25725 -20.90791 -20.05673 -18.64069 -17.74999 -16.73587 -16.30675 -16.03747 -14.90150 -14.76777 -14.58108 -13.78163 -13.66070 -13.06660 -12.79847 -12.25192 -12.04065 -11.51284 -11.26654 -10.58310 -10.46470 -9.44119 -9.11042 -6.67989 0.83021 1.37174 1.44791 1.54004 1.89715 2.14391 2.56144 2.69499 3.18375 3.21017 4.21061 4.73637 5.03267 5.19743 5.49579 5.64758 5.87482 6.36867 6.38626 6.54633 7.25676 7.50848 7.72790 7.96906 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.046507 B = 0.016716 C = 0.012350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.921425 B = 1674.598645 C = 2266.677679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 1.008 2.992 4 H -0.267 1.267 5 H -0.253 1.253 6 H -0.253 1.253 7 C -0.443 4.443 8 H 0.102 0.898 9 C 0.244 3.756 10 N -0.592 5.592 11 H 0.431 0.569 12 C 0.122 3.878 13 N -0.481 5.481 14 C -0.259 4.259 15 C 0.561 3.439 16 O -0.578 6.578 17 O -0.514 6.514 18 H 0.311 0.689 19 H 0.231 0.769 20 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.239 2.210 -0.007 2.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.180 4.180 3 Si 0.827 3.173 4 H -0.191 1.191 5 H -0.177 1.177 6 H -0.177 1.177 7 C -0.476 4.476 8 H 0.120 0.880 9 C 0.125 3.875 10 N -0.213 5.213 11 H 0.279 0.721 12 C -0.162 4.162 13 N -0.201 5.201 14 C -0.379 4.379 15 C 0.414 3.586 16 O -0.474 6.474 17 O -0.326 6.326 18 H 0.123 0.877 19 H 0.247 0.753 20 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -1.516 1.635 -0.011 2.230 hybrid contribution 0.432 1.340 0.000 1.408 sum -1.084 2.975 -0.010 3.167 Atomic orbital electron populations 1.68733 1.08951 1.33001 1.34366 1.27147 0.95883 1.05313 0.89685 0.84735 0.78747 0.74025 0.79823 1.19060 1.17742 1.17735 1.19597 0.96485 0.88853 1.42649 0.88006 1.18916 0.83194 0.93678 0.91711 1.43759 1.06682 1.08813 1.62060 0.72141 1.25142 0.99179 0.80921 1.10928 1.69504 0.98112 1.34690 1.17790 1.19237 0.90152 0.90227 1.38293 1.19365 0.87694 0.79482 0.72060 1.90713 1.53790 1.49946 1.52997 1.84674 1.33238 1.27936 1.86736 0.87662 0.75313 0.72726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -36.23 10.77 21.94 0.24 -36.00 14 2 C 0.04 1.73 5.51 85.47 0.47 2.20 14 3 Si 1.01 35.61 29.57 68.60 2.03 37.64 14 4 H -0.27 -10.01 7.11 99.48 0.71 -9.30 14 5 H -0.25 -8.28 7.11 99.48 0.71 -7.57 14 6 H -0.25 -8.27 7.11 99.48 0.71 -7.57 14 7 C -0.44 -23.87 8.96 23.13 0.21 -23.66 14 8 H 0.10 5.79 6.14 -2.91 -0.02 5.77 14 9 C 0.24 13.48 6.77 39.19 0.27 13.75 14 10 N -0.59 -28.42 5.82 -190.09 -1.11 -29.53 14 11 H 0.43 19.24 6.44 -92.70 -0.60 18.64 14 12 C 0.12 5.44 12.97 180.04 2.34 7.77 14 13 N -0.48 -24.98 11.21 -186.41 -2.09 -27.07 14 14 C -0.26 -14.51 7.13 41.81 0.30 -14.21 14 15 C 0.56 29.59 8.32 70.10 0.58 30.17 14 16 O -0.58 -31.98 15.74 19.54 0.31 -31.67 14 17 O -0.51 -22.20 13.45 -58.08 -0.78 -22.98 14 18 H 0.31 11.84 8.29 -92.71 -0.77 11.07 14 19 H 0.23 7.48 8.06 -2.91 -0.02 7.46 14 20 H 0.41 12.50 9.11 -74.06 -0.67 11.82 14 Total: -1.00 -66.07 195.59 2.79 -63.27 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.04 Total: 30.32 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 4.16 Total: 16.02 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -2.96 Total: -92.60 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -0.47 Total: -54.65 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -66.07 2.79 -63.27 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000199938440.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.104 kcal (2) G-P(sol) polarization free energy of solvation -66.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds