Wall clock time and date at job start Mon Mar 30 2020 02:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47331 * 2 1 4 4 C 1.34527 * 122.32956 * 269.97680 * 3 2 1 5 5 S 1.75798 * 110.14589 * 180.02562 * 4 3 2 6 6 C 1.75887 * 91.12739 * 0.02562 * 5 4 3 7 7 C 1.39907 * 125.41017 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00395 * 180.02562 * 7 6 5 9 9 C 1.40078 * 119.99814 * 0.03435 * 7 6 5 10 10 N 1.30865 * 119.99715 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00074 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47265 * 59.99858 * 11 9 7 13 13 H 1.48496 * 109.47327 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47084 * 300.00228 * 11 9 7 15 15 C 1.36809 * 122.32624 * 90.00217 * 3 2 1 16 16 H 1.09006 * 109.47002 * 59.99773 * 1 2 3 17 17 H 1.08997 * 109.47741 * 179.97438 * 1 2 3 18 18 H 1.09002 * 109.47047 * 300.00033 * 1 2 3 19 19 H 1.09002 * 109.47047 * 239.99967 * 2 1 3 20 20 H 1.09006 * 109.47002 * 120.00227 * 2 1 3 21 21 H 1.08008 * 124.92883 * 0.04157 * 4 3 2 22 22 H 0.97006 * 119.99707 * 179.97438 * 10 9 7 23 23 H 1.07999 * 122.89722 * 0.24253 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2726 2.0989 -1.1367 5 16 2.8460 3.7188 -0.7657 6 6 2.7339 3.4007 0.9605 7 6 3.0562 4.3089 1.9748 8 1 2.9547 4.0201 3.0105 9 6 3.5103 5.5928 1.6469 10 7 3.6327 5.9429 0.3919 11 14 3.9413 6.8051 3.0011 12 1 5.0297 6.2432 3.8407 13 1 4.3925 8.0838 2.3956 14 1 2.7436 7.0524 3.8437 15 6 2.2763 2.1105 1.1561 16 1 -0.3633 0.5139 -0.8900 17 1 -0.3634 -1.0276 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 1.8933 -0.5138 -0.8900 20 1 1.8933 -0.5139 0.8900 21 1 2.1332 1.7054 -2.1328 22 1 3.9468 6.8321 0.1649 23 1 2.1291 1.6825 2.1366 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213676834.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:01 Heat of formation + Delta-G solvation = -8.214586 kcal Electronic energy + Delta-G solvation = -8683.832878 eV Core-core repulsion = 7008.177483 eV Total energy + Delta-G solvation = -1675.655395 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 182.046 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -36.52588 -34.10800 -31.46333 -28.41406 -24.90916 -23.28740 -20.59979 -17.68754 -17.10553 -15.19439 -14.81769 -13.82837 -13.14606 -12.80218 -12.18323 -11.90848 -11.56261 -11.38477 -11.01842 -10.77900 -10.63503 -10.42584 -10.04358 -9.61371 -9.38195 -8.76472 -7.29656 -6.89761 -6.55421 -4.43676 2.70193 2.96795 3.00605 3.17508 3.75384 3.79188 4.17755 4.25662 5.10992 5.80123 5.87100 6.15135 6.45098 6.57744 6.69204 6.85965 6.91932 6.95439 7.36460 7.68224 7.93606 8.17264 8.30738 8.66607 8.68997 9.94391 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.076873 B = 0.012458 C = 0.011095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.147477 B = 2246.961261 C = 2523.131199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.062 4.062 3 C -0.039 4.039 4 C -0.412 4.412 5 S 0.117 5.883 6 C 0.039 3.961 7 C -0.396 4.396 8 H 0.091 0.909 9 C 0.052 3.948 10 N -0.788 5.788 11 Si 0.933 3.067 12 H -0.262 1.262 13 H -0.275 1.275 14 H -0.262 1.262 15 C -0.353 4.353 16 H 0.050 0.950 17 H 0.041 0.959 18 H 0.052 0.948 19 H 0.051 0.949 20 H 0.054 0.946 21 H 0.115 0.885 22 H 0.294 0.706 23 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 -1.308 0.717 1.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 C -0.051 4.051 4 C -0.547 4.547 5 S 0.377 5.623 6 C -0.081 4.081 7 C -0.431 4.431 8 H 0.109 0.891 9 C -0.168 4.168 10 N -0.416 5.416 11 Si 0.757 3.243 12 H -0.187 1.187 13 H -0.200 1.200 14 H -0.187 1.187 15 C -0.378 4.378 16 H 0.069 0.931 17 H 0.060 0.940 18 H 0.072 0.928 19 H 0.070 0.930 20 H 0.073 0.927 21 H 0.133 0.867 22 H 0.107 0.893 23 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.613 0.062 -0.346 0.706 hybrid contribution -0.248 -0.705 1.353 1.546 sum -0.860 -0.643 1.007 1.472 Atomic orbital electron populations 1.21670 0.96212 0.99740 1.01933 1.20179 0.94970 0.94682 1.00346 1.18091 0.99513 0.94477 0.92982 1.25224 1.26363 1.03961 0.99118 1.84374 1.67328 1.08731 1.01841 1.21781 0.95843 0.95163 0.95332 1.19086 1.34393 0.95183 0.94486 0.89133 1.26170 0.93942 0.99631 0.97037 1.68891 1.33149 1.21377 1.18172 0.85914 0.79880 0.78279 0.80228 1.18690 1.19992 1.18697 1.19554 1.25597 0.96190 0.96432 0.93081 0.93973 0.92837 0.92980 0.92712 0.86690 0.89289 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.89 37.16 0.37 -2.05 14 2 C -0.06 -1.24 6.17 -27.88 -0.17 -1.41 14 3 C -0.04 -0.97 5.03 -106.45 -0.54 -1.51 14 4 C -0.41 -10.40 10.98 29.42 0.32 -10.08 14 5 S 0.12 3.10 20.27 -107.50 -2.18 0.92 14 6 C 0.04 1.09 6.19 -38.94 -0.24 0.85 14 7 C -0.40 -10.57 9.29 -38.27 -0.36 -10.92 14 8 H 0.09 2.29 7.85 -52.49 -0.41 1.88 14 9 C 0.05 1.28 5.50 -17.27 -0.09 1.18 14 10 N -0.79 -19.93 10.65 55.56 0.59 -19.34 14 11 Si 0.93 18.27 29.56 -169.99 -5.03 13.24 14 12 H -0.26 -5.07 7.11 56.52 0.40 -4.67 14 13 H -0.28 -5.20 7.11 56.52 0.40 -4.80 14 14 H -0.26 -5.07 7.11 56.52 0.40 -4.67 14 15 C -0.35 -9.40 9.97 -40.08 -0.40 -9.80 14 16 H 0.05 0.90 8.14 -51.93 -0.42 0.48 14 17 H 0.04 0.61 8.14 -51.93 -0.42 0.18 14 18 H 0.05 0.96 8.14 -51.93 -0.42 0.54 14 19 H 0.05 0.97 8.12 -51.93 -0.42 0.54 14 20 H 0.05 1.03 8.12 -51.93 -0.42 0.61 14 21 H 0.12 2.68 8.06 -52.48 -0.42 2.26 14 22 H 0.29 6.71 8.30 -40.82 -0.34 6.37 14 23 H 0.10 2.48 8.06 -52.49 -0.42 2.06 14 LS Contribution 217.77 15.07 3.28 3.28 Total: -1.00 -27.89 217.77 -6.94 -34.84 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -2.50 Total: 0.79 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: -1.11 Total: -33.73 kcal Atomic # 7 Polarization: -19.93 SS G_CDS: 0.59 Total: -19.34 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -2.18 Total: 0.92 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -27.89 -6.94 -34.84 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213676834.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.622 kcal (2) G-P(sol) polarization free energy of solvation -27.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds