Wall clock time and date at job start Mon Mar 30 2020 02:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47331 * 2 1 4 4 C 1.34527 * 122.32956 * 269.97680 * 3 2 1 5 5 S 1.75798 * 110.14589 * 180.02562 * 4 3 2 6 6 C 1.75887 * 91.12739 * 0.02562 * 5 4 3 7 7 C 1.39907 * 125.41017 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00395 * 180.02562 * 7 6 5 9 9 C 1.40078 * 119.99814 * 0.03435 * 7 6 5 10 10 N 1.30865 * 119.99715 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00074 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47265 * 59.99858 * 11 9 7 13 13 H 1.48496 * 109.47327 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47084 * 300.00228 * 11 9 7 15 15 C 1.36809 * 122.32624 * 90.00217 * 3 2 1 16 16 H 1.09006 * 109.47002 * 59.99773 * 1 2 3 17 17 H 1.08997 * 109.47741 * 179.97438 * 1 2 3 18 18 H 1.09002 * 109.47047 * 300.00033 * 1 2 3 19 19 H 1.09002 * 109.47047 * 239.99967 * 2 1 3 20 20 H 1.09006 * 109.47002 * 120.00227 * 2 1 3 21 21 H 1.08008 * 124.92883 * 0.04157 * 4 3 2 22 22 H 0.97006 * 119.99707 * 179.97438 * 10 9 7 23 23 H 1.07999 * 122.89722 * 0.24253 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2726 2.0989 -1.1367 5 16 2.8460 3.7188 -0.7657 6 6 2.7339 3.4007 0.9605 7 6 3.0562 4.3089 1.9748 8 1 2.9547 4.0201 3.0105 9 6 3.5103 5.5928 1.6469 10 7 3.6327 5.9429 0.3919 11 14 3.9413 6.8051 3.0011 12 1 5.0297 6.2432 3.8407 13 1 4.3925 8.0838 2.3956 14 1 2.7436 7.0524 3.8437 15 6 2.2763 2.1105 1.1561 16 1 -0.3633 0.5139 -0.8900 17 1 -0.3634 -1.0276 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 1.8933 -0.5138 -0.8900 20 1 1.8933 -0.5139 0.8900 21 1 2.1332 1.7054 -2.1328 22 1 3.9468 6.8321 0.1649 23 1 2.1291 1.6825 2.1366 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213676834.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:01 Heat of formation + Delta-G solvation = -23.257135 kcal Electronic energy + Delta-G solvation = -8684.485171 eV Core-core repulsion = 7008.177483 eV Total energy + Delta-G solvation = -1676.307689 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 182.046 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.41629 -36.01962 -33.17496 -30.29842 -26.88835 -24.95132 -22.45478 -19.68687 -19.00216 -17.10630 -16.64266 -15.50828 -14.74826 -14.44335 -13.99936 -13.79749 -13.26688 -13.04027 -12.83483 -12.49867 -12.33860 -12.04755 -11.70003 -11.47416 -11.20533 -10.77026 -9.32430 -8.78283 -8.59865 -6.46971 0.82216 1.36830 1.52246 1.53258 1.73886 2.09035 2.27334 2.29173 3.11662 4.31245 4.37976 4.65059 4.89329 4.98214 5.01115 5.06532 5.18808 5.34973 5.42804 5.68834 5.96495 6.18082 6.34580 6.67505 6.69446 8.08341 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.076873 B = 0.012458 C = 0.011095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.147477 B = 2246.961261 C = 2523.131199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.062 4.062 3 C -0.042 4.042 4 C -0.426 4.426 5 S 0.090 5.910 6 C 0.008 3.992 7 C -0.426 4.426 8 H 0.095 0.905 9 C 0.013 3.987 10 N -0.809 5.809 11 Si 1.011 2.989 12 H -0.256 1.256 13 H -0.260 1.260 14 H -0.256 1.256 15 C -0.380 4.380 16 H 0.045 0.955 17 H 0.078 0.922 18 H 0.041 0.959 19 H 0.068 0.932 20 H 0.063 0.937 21 H 0.132 0.868 22 H 0.306 0.694 23 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.135 -1.154 1.336 2.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.102 4.102 3 C -0.053 4.053 4 C -0.560 4.560 5 S 0.350 5.650 6 C -0.112 4.112 7 C -0.461 4.461 8 H 0.113 0.887 9 C -0.205 4.205 10 N -0.436 5.436 11 Si 0.830 3.170 12 H -0.180 1.180 13 H -0.184 1.184 14 H -0.180 1.180 15 C -0.405 4.405 16 H 0.064 0.936 17 H 0.097 0.903 18 H 0.061 0.939 19 H 0.086 0.914 20 H 0.082 0.918 21 H 0.150 0.850 22 H 0.119 0.881 23 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.659 0.191 0.249 0.730 hybrid contribution -0.226 -0.747 1.138 1.380 sum -0.885 -0.557 1.387 1.737 Atomic orbital electron populations 1.21615 0.94230 1.01943 1.01152 1.20267 0.96634 0.91690 1.01601 1.18539 0.98067 0.96712 0.91958 1.25429 1.27044 1.03338 1.00194 1.84230 1.68517 1.10506 1.01778 1.22240 0.96585 0.96188 0.96167 1.19478 1.35529 0.96502 0.94627 0.88665 1.27219 0.92760 1.00779 0.99735 1.68948 1.32187 1.22415 1.20075 0.84773 0.79762 0.75752 0.76729 1.18037 1.18429 1.18046 1.19799 1.26975 0.96440 0.97298 0.93571 0.90267 0.93932 0.91365 0.91799 0.85001 0.88106 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 9.89 71.98 0.71 -3.61 14 2 C -0.06 -2.37 6.17 29.85 0.18 -2.18 14 3 C -0.04 -2.05 5.03 -21.05 -0.11 -2.16 14 4 C -0.43 -21.48 10.98 66.97 0.74 -20.74 14 5 S 0.09 4.86 20.27 -56.49 -1.14 3.72 14 6 C 0.01 0.47 6.19 22.69 0.14 0.61 14 7 C -0.43 -22.98 9.29 23.12 0.21 -22.76 14 8 H 0.10 4.86 7.85 -2.91 -0.02 4.84 14 9 C 0.01 0.61 5.50 85.28 0.47 1.08 14 10 N -0.81 -40.71 10.65 21.86 0.23 -40.47 14 11 Si 1.01 36.22 29.56 68.60 2.03 38.24 14 12 H -0.26 -8.90 7.11 99.48 0.71 -8.20 14 13 H -0.26 -8.65 7.11 99.48 0.71 -7.94 14 14 H -0.26 -8.91 7.11 99.48 0.71 -8.20 14 15 C -0.38 -20.53 9.97 21.95 0.22 -20.31 14 16 H 0.05 1.54 8.14 -2.38 -0.02 1.52 14 17 H 0.08 2.01 8.14 -2.39 -0.02 1.99 14 18 H 0.04 1.46 8.14 -2.39 -0.02 1.44 14 19 H 0.07 2.36 8.12 -2.39 -0.02 2.34 14 20 H 0.06 2.29 8.12 -2.38 -0.02 2.28 14 21 H 0.13 6.05 8.06 -2.91 -0.02 6.03 14 22 H 0.31 13.67 8.30 -92.70 -0.77 12.91 14 23 H 0.10 5.10 8.06 -2.91 -0.02 5.08 14 Total: -1.00 -59.38 217.77 4.87 -54.51 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 1.18 Total: 14.09 kcal Atomic # 6 Polarization: -72.65 SS G_CDS: 2.57 Total: -70.08 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.23 Total: -40.47 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.24 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -1.14 Total: 3.72 kcal Total: -59.38 4.87 -54.51 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213676834.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.250 kcal (2) G-P(sol) polarization free energy of solvation -59.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds