Wall clock time and date at job start Mon Mar 30 2020 02:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50696 * 109.47266 * 2 1 4 4 C 1.32572 * 124.55350 * 90.00470 * 3 2 1 5 5 C 1.44761 * 113.16433 * 180.28357 * 4 3 2 6 6 C 1.41261 * 123.64267 * 179.73499 * 5 4 3 7 7 H 1.08004 * 119.99799 * 200.32353 * 6 5 4 8 8 C 1.39680 * 120.00516 * 20.31832 * 6 5 4 9 9 N 1.31061 * 120.00117 * 11.17965 * 8 6 5 10 10 Si 1.86797 * 120.00378 * 191.17704 * 8 6 5 11 11 H 1.48503 * 109.47438 * 90.00121 * 10 8 6 12 12 H 1.48501 * 109.47482 * 210.00507 * 10 8 6 13 13 H 1.48502 * 109.47007 * 330.00208 * 10 8 6 14 14 C 1.37488 * 112.70752 * 359.54515 * 5 4 3 15 15 S 1.70439 * 110.66084 * 0.43844 * 14 5 4 16 16 H 1.09003 * 109.47055 * 299.99689 * 1 2 3 17 17 H 1.09001 * 109.47656 * 59.99265 * 1 2 3 18 18 H 1.09001 * 109.47672 * 180.02562 * 1 2 3 19 19 H 1.09003 * 109.47055 * 240.00310 * 2 1 3 20 20 H 1.08996 * 109.47219 * 120.00620 * 2 1 3 21 21 H 1.08004 * 123.41770 * 0.02562 * 4 3 2 22 22 H 0.96999 * 120.00282 * 179.97438 * 9 8 6 23 23 H 1.08005 * 124.66645 * 180.18312 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2830 2.1296 1.0919 5 6 2.7499 3.4698 0.8060 6 6 3.0768 4.4142 1.8043 7 1 3.0996 5.4671 1.5648 8 6 3.3704 3.9865 3.1012 9 7 3.5585 2.7124 3.3442 10 14 3.4951 5.2303 4.4893 11 1 2.1607 5.4076 5.1165 12 1 4.4595 4.7412 5.5071 13 1 3.9642 6.5310 3.9477 14 6 2.8446 3.7225 -0.5421 15 16 2.3630 2.3594 -1.4448 16 1 -0.3633 0.5138 0.8900 17 1 -0.3634 0.5139 -0.8899 18 1 -0.3634 -1.0276 0.0005 19 1 1.8933 -0.5138 -0.8900 20 1 1.8933 -0.5139 0.8899 21 1 2.1485 1.7476 2.0931 22 1 3.7628 2.4154 4.2447 23 1 3.1746 4.6576 -0.9701 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213676907.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:56 Heat of formation + Delta-G solvation = 1.462336 kcal Electronic energy + Delta-G solvation = -8747.183870 eV Core-core repulsion = 7071.948098 eV Total energy + Delta-G solvation = -1675.235772 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 182.046 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.46019 -33.66079 -31.95422 -27.85226 -25.45591 -23.01190 -20.48272 -18.25734 -16.81748 -15.16569 -14.96929 -13.83080 -13.41207 -12.96841 -12.10388 -11.78644 -11.40796 -11.26597 -11.11157 -10.88668 -10.67660 -10.49315 -10.17054 -9.71837 -9.34758 -8.96007 -7.22865 -6.93063 -6.66007 -4.24865 2.65787 3.06849 3.10542 3.14402 3.26878 3.88211 4.07647 4.15989 5.38087 5.61333 5.68819 5.94018 6.29672 6.34474 6.52418 6.71195 6.93177 7.18648 7.46941 7.57308 7.72691 8.07955 8.49789 8.85258 8.98759 10.29543 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.056936 B = 0.013382 C = 0.011457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.661081 B = 2091.858670 C = 2443.294931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C -0.213 4.213 4 C -0.089 4.089 5 C 0.092 3.908 6 C -0.444 4.444 7 H 0.076 0.924 8 C 0.074 3.926 9 N -0.815 5.815 10 Si 0.914 3.086 11 H -0.269 1.269 12 H -0.278 1.278 13 H -0.264 1.264 14 C -0.422 4.422 15 S -0.003 6.003 16 H 0.054 0.946 17 H 0.053 0.947 18 H 0.047 0.953 19 H 0.058 0.942 20 H 0.068 0.932 21 H 0.146 0.854 22 H 0.278 0.722 23 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.046 -3.044 -1.053 4.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 C -0.328 4.328 4 C -0.122 4.122 5 C 0.081 3.919 6 C -0.478 4.478 7 H 0.094 0.906 8 C -0.142 4.142 9 N -0.443 5.443 10 Si 0.739 3.261 11 H -0.195 1.195 12 H -0.204 1.204 13 H -0.188 1.188 14 C -0.558 4.558 15 S 0.256 5.744 16 H 0.073 0.927 17 H 0.072 0.928 18 H 0.066 0.934 19 H 0.077 0.923 20 H 0.086 0.914 21 H 0.163 0.837 22 H 0.088 0.912 23 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.072 -3.458 -2.390 5.206 hybrid contribution 0.337 1.024 2.227 2.474 sum -2.734 -2.434 -0.163 3.664 Atomic orbital electron populations 1.21758 0.95762 1.00376 1.02163 1.19903 0.95086 0.91756 1.01462 1.23845 1.12741 0.99676 0.96541 1.21753 0.97747 0.94455 0.98205 1.17894 0.91072 0.91761 0.91137 1.19107 1.41494 0.94360 0.92819 0.90628 1.25876 0.92513 0.95852 0.99951 1.69839 1.36456 1.15531 1.22489 0.86218 0.78740 0.81140 0.79985 1.19458 1.20374 1.18764 1.24081 1.31990 1.03116 0.96572 1.81633 1.72957 1.07972 1.11864 0.92656 0.92824 0.93362 0.92299 0.91362 0.83661 0.91162 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.89 37.15 0.37 -1.93 14 2 C -0.04 -0.78 6.39 -27.89 -0.18 -0.96 14 3 C -0.21 -4.93 5.68 -36.22 -0.21 -5.14 14 4 C -0.09 -2.33 8.98 -38.91 -0.35 -2.68 14 5 C 0.09 2.57 5.68 -106.45 -0.60 1.97 14 6 C -0.44 -12.35 9.24 -37.90 -0.35 -12.70 14 7 H 0.08 2.05 7.87 -52.48 -0.41 1.63 14 8 C 0.07 1.90 5.38 -17.34 -0.09 1.81 14 9 N -0.82 -21.43 10.73 55.54 0.60 -20.84 14 10 Si 0.91 19.29 29.57 -169.99 -5.03 14.26 14 11 H -0.27 -5.58 7.11 56.52 0.40 -5.18 14 12 H -0.28 -5.73 7.11 56.52 0.40 -5.32 14 13 H -0.26 -5.53 7.11 56.52 0.40 -5.12 14 14 C -0.42 -11.20 10.86 30.46 0.33 -10.87 14 15 S 0.00 -0.08 22.98 -107.50 -2.47 -2.55 14 16 H 0.05 0.92 8.14 -51.93 -0.42 0.50 14 17 H 0.05 0.86 8.14 -51.93 -0.42 0.44 14 18 H 0.05 0.63 8.14 -51.93 -0.42 0.21 14 19 H 0.06 1.00 8.14 -51.93 -0.42 0.58 14 20 H 0.07 1.22 8.14 -51.93 -0.42 0.80 14 21 H 0.15 3.86 6.28 -52.48 -0.33 3.53 14 22 H 0.28 6.64 8.30 -40.82 -0.34 6.31 14 23 H 0.12 3.19 8.06 -52.48 -0.42 2.77 14 LS Contribution 217.92 15.07 3.28 3.28 Total: -1.00 -28.09 217.92 -7.11 -35.21 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -2.41 Total: 1.13 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: -1.08 Total: -30.50 kcal Atomic # 7 Polarization: -21.43 SS G_CDS: 0.60 Total: -20.84 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.47 Total: -2.55 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -28.09 -7.11 -35.21 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213676907.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.669 kcal (2) G-P(sol) polarization free energy of solvation -28.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds