Wall clock time and date at job start Mon Mar 30 2020 01:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99723 * 2 1 4 4 H 1.08993 * 109.53770 * 359.90374 * 3 2 1 5 5 C 1.53045 * 109.50234 * 239.80150 * 3 2 1 6 6 N 1.46844 * 109.52158 * 180.88316 * 5 3 2 7 7 C 1.46853 * 111.19849 * 61.74212 * 6 5 3 8 8 C 1.53032 * 109.52302 * 298.25518 * 7 6 5 9 9 C 1.53118 * 109.50236 * 120.00355 * 3 2 1 10 10 H 1.09002 * 109.57391 * 297.52807 * 9 3 2 11 11 C 1.50707 * 109.52716 * 57.68581 * 9 3 2 12 12 H 1.08003 * 119.99459 * 5.35481 * 11 9 3 13 13 C 1.37870 * 120.00262 * 185.36161 * 11 9 3 14 14 N 1.31514 * 120.00206 * 197.31606 * 13 11 9 15 15 Si 1.86803 * 120.00309 * 17.30471 * 13 11 9 16 16 H 1.48499 * 109.47343 * 180.02562 * 15 13 11 17 17 H 1.48499 * 109.46956 * 60.00271 * 15 13 11 18 18 H 1.48502 * 109.46911 * 300.00758 * 15 13 11 19 19 H 1.07997 * 120.00189 * 179.97438 * 1 2 3 20 20 H 1.08000 * 120.00433 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.00200 * 180.02562 * 2 1 3 22 22 H 1.08992 * 109.46032 * 60.86615 * 5 3 2 23 23 H 1.09004 * 109.46300 * 300.89894 * 5 3 2 24 24 H 1.00899 * 111.00199 * 185.83723 * 6 5 3 25 25 H 1.08999 * 109.46035 * 178.24006 * 7 6 5 26 26 H 1.09001 * 109.45025 * 58.26755 * 7 6 5 27 27 H 1.09000 * 109.50517 * 299.23970 * 8 7 6 28 28 H 1.09001 * 109.53277 * 179.13672 * 8 7 6 29 29 H 0.97000 * 119.99255 * 354.59837 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3560 2.1344 -0.0017 5 6 2.9473 1.3848 -1.2469 6 7 3.6976 2.6471 -1.2366 7 6 4.5857 2.7275 -0.0698 8 6 3.7507 2.6879 1.2121 9 6 2.9440 1.3870 1.2499 10 1 2.3159 1.3737 2.1407 11 6 3.8860 0.2110 1.2804 12 1 3.9207 -0.4747 0.4467 13 6 4.7033 0.0104 2.3725 14 7 5.7465 -0.7846 2.2760 15 14 4.3291 0.8680 3.9892 16 1 5.3505 0.4894 4.9985 17 1 2.9843 0.4579 4.4674 18 1 4.3551 2.3390 3.7869 19 1 -0.5400 -0.9353 -0.0004 20 1 -0.5401 0.9353 -0.0004 21 1 1.8500 -0.9353 -0.0004 22 1 2.3221 1.3412 -2.1386 23 1 3.6452 0.5475 -1.2515 24 1 4.2156 2.7669 -2.0942 25 1 5.1504 3.6590 -0.1068 26 1 5.2757 1.8838 -0.0800 27 1 3.0699 3.5389 1.2294 28 1 4.4107 2.7321 2.0784 29 1 5.8970 -1.2904 1.4621 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238108679.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:00 Heat of formation + Delta-G solvation = 8.493614 kcal Electronic energy + Delta-G solvation = -11383.235469 eV Core-core repulsion = 9499.103481 eV Total energy + Delta-G solvation = -1884.131987 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.25165 -33.64168 -32.83111 -30.58423 -28.79812 -24.79599 -22.38093 -21.96221 -19.20859 -18.73717 -16.58490 -15.90369 -14.29812 -13.84037 -13.75069 -13.52071 -12.85249 -12.64625 -12.28214 -11.57122 -11.40293 -10.87048 -10.64746 -10.30026 -10.11616 -9.81411 -9.46737 -9.39940 -8.79406 -8.49534 -8.22072 -7.64068 -6.40372 -4.00384 2.98601 3.40229 3.45763 3.62991 4.51675 4.92985 5.30873 5.65346 5.78698 5.85387 6.04350 6.10961 6.25660 6.36302 6.44137 6.54689 6.72129 6.77492 6.99682 7.09360 7.14275 7.31629 7.38855 7.50881 7.78231 8.06347 8.22161 8.39909 8.93672 9.65718 10.98274 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.035702 B = 0.019182 C = 0.015813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.087155 B = 1459.364588 C = 1770.239057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.098 4.098 3 C -0.045 4.045 4 H 0.055 0.945 5 C 0.077 3.923 6 N -0.693 5.693 7 C 0.071 3.929 8 C -0.117 4.117 9 C 0.023 3.977 10 H 0.020 0.980 11 C -0.586 4.586 12 H 0.056 0.944 13 C 0.029 3.971 14 N -0.911 5.911 15 Si 1.045 2.955 16 H -0.289 1.289 17 H -0.285 1.285 18 H -0.274 1.274 19 H 0.086 0.914 20 H 0.087 0.913 21 H 0.108 0.892 22 H 0.051 0.949 23 H 0.039 0.961 24 H 0.327 0.673 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.062 0.938 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.184 4.718 -3.983 8.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.116 4.116 3 C -0.064 4.064 4 H 0.074 0.926 5 C -0.052 4.052 6 N -0.322 5.322 7 C -0.058 4.058 8 C -0.155 4.155 9 C 0.004 3.996 10 H 0.038 0.962 11 C -0.624 4.624 12 H 0.074 0.926 13 C -0.175 4.175 14 N -0.546 5.546 15 Si 0.874 3.126 16 H -0.215 1.215 17 H -0.211 1.211 18 H -0.201 1.201 19 H 0.105 0.895 20 H 0.105 0.895 21 H 0.126 0.874 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.143 0.857 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.103 5.298 -2.131 7.658 hybrid contribution 0.118 -0.987 -1.782 2.041 sum -4.986 4.310 -3.913 7.665 Atomic orbital electron populations 1.23602 0.96005 1.00555 1.07042 1.23040 0.95075 0.99314 0.94196 1.20250 0.96143 0.93443 0.96528 0.92625 1.21735 0.96096 0.90592 0.96763 1.60367 1.30829 1.36050 1.04990 1.21758 0.94198 0.99216 0.90651 1.21970 0.98750 0.98330 0.96498 1.19050 0.93806 0.94348 0.92420 0.96180 1.21936 1.24002 1.11111 1.05336 0.92584 1.25703 0.92076 0.97664 1.02104 1.70878 1.23832 1.28250 1.31634 0.84041 0.76015 0.76440 0.76105 1.21478 1.21142 1.20095 0.89515 0.89474 0.87378 0.93018 0.94249 0.85674 0.93244 0.93628 0.94494 0.91931 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.02 14.32 29.02 0.42 -3.61 15 2 C -0.10 -1.93 8.10 -36.02 -0.29 -2.22 15 3 C -0.04 -0.93 2.41 -91.69 -0.22 -1.15 15 4 H 0.06 1.12 7.79 -51.93 -0.40 0.72 15 5 C 0.08 1.51 5.60 -3.83 -0.02 1.49 15 6 N -0.69 -12.95 6.85 -113.81 -0.78 -13.73 15 7 C 0.07 1.45 6.34 -3.83 -0.02 1.43 15 8 C -0.12 -2.60 5.29 -26.65 -0.14 -2.74 15 9 C 0.02 0.54 1.74 -91.65 -0.16 0.38 15 10 H 0.02 0.49 6.81 -51.93 -0.35 0.14 15 11 C -0.59 -15.71 6.34 -34.44 -0.22 -15.93 15 12 H 0.06 1.61 6.24 -52.48 -0.33 1.28 15 13 C 0.03 0.81 5.33 -17.82 -0.09 0.72 15 14 N -0.91 -27.55 13.69 55.43 0.76 -26.79 15 15 Si 1.04 25.28 26.34 -169.99 -4.48 20.80 15 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 18 H -0.27 -6.16 5.64 56.52 0.32 -5.84 15 19 H 0.09 1.33 8.06 -52.49 -0.42 0.90 15 20 H 0.09 1.39 7.84 -52.49 -0.41 0.98 15 21 H 0.11 2.28 7.29 -52.49 -0.38 1.90 15 22 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.04 0.86 6.68 -51.93 -0.35 0.51 15 24 H 0.33 5.26 8.90 -39.29 -0.35 4.91 15 25 H 0.05 0.91 8.14 -51.93 -0.42 0.48 15 26 H 0.05 1.07 7.31 -51.93 -0.38 0.69 15 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 15 28 H 0.06 1.44 4.81 -51.93 -0.25 1.19 15 29 H 0.26 7.99 8.73 -40.82 -0.36 7.63 15 LS Contribution 227.08 15.07 3.42 3.42 Total: -1.00 -28.60 227.08 -5.96 -34.57 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -4.13 Total: 3.37 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -0.76 Total: -21.63 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: -0.02 Total: -40.53 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -4.48 Total: 20.80 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -28.60 -5.96 -34.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238108679.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.060 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds