Wall clock time and date at job start Mon Mar 30 2020 01:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99723 * 2 1 4 4 H 1.08993 * 109.53770 * 359.90374 * 3 2 1 5 5 C 1.53045 * 109.50234 * 239.80150 * 3 2 1 6 6 N 1.46844 * 109.52158 * 180.88316 * 5 3 2 7 7 C 1.46853 * 111.19849 * 61.74212 * 6 5 3 8 8 C 1.53032 * 109.52302 * 298.25518 * 7 6 5 9 9 C 1.53118 * 109.50236 * 120.00355 * 3 2 1 10 10 H 1.09002 * 109.57391 * 297.52807 * 9 3 2 11 11 C 1.50707 * 109.52716 * 57.68581 * 9 3 2 12 12 H 1.08003 * 119.99459 * 5.35481 * 11 9 3 13 13 C 1.37870 * 120.00262 * 185.36161 * 11 9 3 14 14 N 1.31514 * 120.00206 * 197.31606 * 13 11 9 15 15 Si 1.86803 * 120.00309 * 17.30471 * 13 11 9 16 16 H 1.48499 * 109.47343 * 180.02562 * 15 13 11 17 17 H 1.48499 * 109.46956 * 60.00271 * 15 13 11 18 18 H 1.48502 * 109.46911 * 300.00758 * 15 13 11 19 19 H 1.07997 * 120.00189 * 179.97438 * 1 2 3 20 20 H 1.08000 * 120.00433 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.00200 * 180.02562 * 2 1 3 22 22 H 1.08992 * 109.46032 * 60.86615 * 5 3 2 23 23 H 1.09004 * 109.46300 * 300.89894 * 5 3 2 24 24 H 1.00899 * 111.00199 * 185.83723 * 6 5 3 25 25 H 1.08999 * 109.46035 * 178.24006 * 7 6 5 26 26 H 1.09001 * 109.45025 * 58.26755 * 7 6 5 27 27 H 1.09000 * 109.50517 * 299.23970 * 8 7 6 28 28 H 1.09001 * 109.53277 * 179.13672 * 8 7 6 29 29 H 0.97000 * 119.99255 * 354.59837 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3560 2.1344 -0.0017 5 6 2.9473 1.3848 -1.2469 6 7 3.6976 2.6471 -1.2366 7 6 4.5857 2.7275 -0.0698 8 6 3.7507 2.6879 1.2121 9 6 2.9440 1.3870 1.2499 10 1 2.3159 1.3737 2.1407 11 6 3.8860 0.2110 1.2804 12 1 3.9207 -0.4747 0.4467 13 6 4.7033 0.0104 2.3725 14 7 5.7465 -0.7846 2.2760 15 14 4.3291 0.8680 3.9892 16 1 5.3505 0.4894 4.9985 17 1 2.9843 0.4579 4.4674 18 1 4.3551 2.3390 3.7869 19 1 -0.5400 -0.9353 -0.0004 20 1 -0.5401 0.9353 -0.0004 21 1 1.8500 -0.9353 -0.0004 22 1 2.3221 1.3412 -2.1386 23 1 3.6452 0.5475 -1.2515 24 1 4.2156 2.7669 -2.0942 25 1 5.1504 3.6590 -0.1068 26 1 5.2757 1.8838 -0.0800 27 1 3.0699 3.5389 1.2294 28 1 4.4107 2.7321 2.0784 29 1 5.8970 -1.2904 1.4621 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238108679.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:00 Heat of formation + Delta-G solvation = -11.687524 kcal Electronic energy + Delta-G solvation = -11384.110589 eV Core-core repulsion = 9499.103481 eV Total energy + Delta-G solvation = -1885.007107 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.93795 -35.20140 -34.83948 -32.44178 -30.38351 -26.77785 -23.99229 -23.75167 -20.84075 -20.60037 -18.53680 -17.51758 -15.98186 -15.62827 -15.52510 -15.10465 -14.61767 -14.41083 -13.97430 -13.42999 -13.10398 -12.48657 -12.41329 -12.18837 -11.81854 -11.61933 -11.24551 -11.10961 -10.75052 -10.32359 -10.02731 -9.30513 -8.64043 -6.22938 1.46078 1.51238 1.54461 1.71830 2.51682 3.15137 3.40251 4.13267 4.19438 4.22562 4.43306 4.56655 4.58675 4.76465 4.79153 5.03090 5.04678 5.18598 5.25368 5.35577 5.36804 5.55006 5.85240 5.97075 6.10262 6.15787 6.23539 6.61061 6.69646 7.50540 8.73508 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.035702 B = 0.019182 C = 0.015813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.087155 B = 1459.364588 C = 1770.239057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 C -0.041 4.041 4 H 0.072 0.928 5 C 0.081 3.919 6 N -0.681 5.681 7 C 0.075 3.925 8 C -0.119 4.119 9 C 0.016 3.984 10 H 0.017 0.983 11 C -0.566 4.566 12 H 0.021 0.979 13 C -0.025 4.025 14 N -0.948 5.948 15 Si 1.079 2.921 16 H -0.296 1.296 17 H -0.271 1.271 18 H -0.243 1.243 19 H 0.106 0.894 20 H 0.108 0.892 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.005 0.995 24 H 0.345 0.655 25 H 0.077 0.923 26 H 0.006 0.994 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.202 6.756 -4.103 10.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.155 4.155 3 C -0.060 4.060 4 H 0.090 0.910 5 C -0.049 4.049 6 N -0.312 5.312 7 C -0.055 4.055 8 C -0.157 4.157 9 C -0.003 4.003 10 H 0.035 0.965 11 C -0.604 4.604 12 H 0.039 0.961 13 C -0.222 4.222 14 N -0.585 5.585 15 Si 0.902 3.098 16 H -0.223 1.223 17 H -0.197 1.197 18 H -0.167 1.167 19 H 0.124 0.876 20 H 0.126 0.874 21 H 0.098 0.902 22 H 0.097 0.903 23 H 0.023 0.977 24 H 0.163 0.837 25 H 0.096 0.904 26 H 0.024 0.976 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.137 7.352 -2.287 10.498 hybrid contribution 0.655 -1.671 -1.850 2.577 sum -6.483 5.681 -4.137 9.561 Atomic orbital electron populations 1.23875 0.94840 1.02454 1.02288 1.22831 0.96119 0.97904 0.98629 1.20201 0.96076 0.94473 0.95275 0.90960 1.21702 0.95740 0.89723 0.97701 1.60376 1.30430 1.35041 1.05305 1.21665 0.93761 0.98990 0.91046 1.21929 0.98884 0.98073 0.96765 1.19097 0.93727 0.93497 0.94018 0.96468 1.22037 1.23659 1.11236 1.03485 0.96074 1.26981 0.91731 0.98011 1.05434 1.71010 1.26051 1.30482 1.30998 0.83624 0.76162 0.77588 0.72418 1.22268 1.19671 1.16714 0.87606 0.87381 0.90183 0.90337 0.97688 0.83746 0.90434 0.97593 0.92104 0.93060 0.94375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.10 14.32 67.79 0.97 -5.13 15 2 C -0.14 -5.22 8.10 25.65 0.21 -5.01 15 3 C -0.04 -1.65 2.41 -11.49 -0.03 -1.67 15 4 H 0.07 2.64 7.79 -2.39 -0.02 2.62 15 5 C 0.08 3.06 5.60 86.33 0.48 3.54 15 6 N -0.68 -23.87 6.85 -514.00 -3.52 -27.39 15 7 C 0.07 2.96 6.34 86.32 0.55 3.51 15 8 C -0.12 -4.99 5.29 30.65 0.16 -4.82 15 9 C 0.02 0.72 1.74 -11.46 -0.02 0.70 15 10 H 0.02 0.81 6.81 -2.39 -0.02 0.79 15 11 C -0.57 -31.08 6.34 25.60 0.16 -30.92 15 12 H 0.02 1.28 6.24 -2.91 -0.02 1.26 15 13 C -0.02 -1.43 5.33 84.65 0.45 -0.98 15 14 N -0.95 -59.61 13.69 21.44 0.29 -59.32 15 15 Si 1.08 50.55 26.34 68.60 1.81 52.35 15 16 H -0.30 -14.18 7.11 99.48 0.71 -13.47 15 17 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 18 H -0.24 -10.08 5.64 99.48 0.56 -9.52 15 19 H 0.11 2.85 8.06 -2.91 -0.02 2.83 15 20 H 0.11 2.92 7.84 -2.91 -0.02 2.90 15 21 H 0.08 3.48 7.29 -2.91 -0.02 3.46 15 22 H 0.08 2.55 8.14 -2.39 -0.02 2.54 15 23 H 0.00 0.22 6.68 -2.39 -0.02 0.20 15 24 H 0.34 10.22 8.90 -89.69 -0.80 9.42 15 25 H 0.08 2.64 8.14 -2.39 -0.02 2.62 15 26 H 0.01 0.27 7.31 -2.39 -0.02 0.25 15 27 H 0.06 2.28 8.14 -2.39 -0.02 2.26 15 28 H 0.05 2.25 4.81 -2.39 -0.01 2.24 15 29 H 0.25 15.85 8.73 -92.71 -0.81 15.04 15 Total: -1.00 -62.63 227.08 1.66 -60.97 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.14 Total: 14.16 kcal Atomic # 6 Polarization: -43.72 SS G_CDS: 2.94 Total: -40.78 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -3.22 Total: -86.70 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 1.81 Total: 52.35 kcal Total: -62.63 1.66 -60.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238108679.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.280 kcal (2) G-P(sol) polarization free energy of solvation -62.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds