Wall clock time and date at job start Mon Mar 30 2020 01:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50699 * 119.99883 * 2 1 4 4 H 1.08996 * 109.54125 * 359.90512 * 3 2 1 5 5 C 1.53041 * 109.50512 * 239.80403 * 3 2 1 6 6 N 1.46847 * 109.51486 * 180.87868 * 5 3 2 7 7 C 1.46847 * 111.20163 * 61.75514 * 6 5 3 8 8 C 1.53044 * 109.51335 * 298.24410 * 7 6 5 9 9 C 1.53119 * 109.27589 * 59.18419 * 8 7 6 10 10 H 1.08993 * 109.52284 * 62.25342 * 9 8 7 11 11 C 1.50703 * 109.51728 * 182.37636 * 9 8 7 12 12 H 1.07995 * 119.99773 * 120.00133 * 11 9 8 13 13 C 1.37875 * 120.00103 * 299.99922 * 11 9 8 14 14 N 1.31514 * 119.99903 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00277 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46994 * 59.99589 * 15 13 11 17 17 H 1.48494 * 109.47456 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46869 * 300.00059 * 15 13 11 19 19 H 1.08006 * 119.99923 * 179.97438 * 1 2 3 20 20 H 1.07999 * 120.00245 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.00219 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.45785 * 300.89372 * 5 3 2 23 23 H 1.08995 * 109.46178 * 60.87456 * 5 3 2 24 24 H 1.00902 * 111.00813 * 297.64967 * 6 5 3 25 25 H 1.09002 * 109.46448 * 178.23132 * 7 6 5 26 26 H 1.08994 * 109.45958 * 58.25497 * 7 6 5 27 27 H 1.09000 * 109.49745 * 179.12223 * 8 7 6 28 28 H 1.08996 * 109.50070 * 299.23917 * 8 7 6 29 29 H 0.97007 * 120.00032 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3561 2.1344 -0.0017 5 6 2.9472 1.3849 -1.2468 6 7 3.6974 2.6472 -1.2364 7 6 4.5856 2.7276 -0.0698 8 6 3.7506 2.6879 1.2122 9 6 2.9440 1.3869 1.2499 10 1 3.6253 0.5365 1.2720 11 6 2.0756 1.3686 2.4815 12 1 1.0022 1.3002 2.3843 13 6 2.6514 1.4391 3.7322 14 7 3.9586 1.5218 3.8506 15 14 1.5751 1.4156 5.2587 16 1 0.7937 0.1532 5.2941 17 1 2.4309 1.5015 6.4692 18 1 0.6449 2.5727 5.2263 19 1 -0.5400 -0.9354 -0.0004 20 1 -0.5400 0.9353 -0.0004 21 1 1.8500 -0.9353 -0.0004 22 1 3.6452 0.5476 -1.2514 23 1 2.3220 1.3414 -2.1386 24 1 3.0732 3.4393 -1.2708 25 1 5.1504 3.6591 -0.1067 26 1 5.2757 1.8839 -0.0801 27 1 4.4112 2.7318 2.0781 28 1 3.0699 3.5389 1.2295 29 1 4.3638 1.5710 4.7306 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238108713.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:03 Heat of formation + Delta-G solvation = 3.035827 kcal Electronic energy + Delta-G solvation = -11225.419437 eV Core-core repulsion = 9341.050783 eV Total energy + Delta-G solvation = -1884.368655 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.20494 -33.62938 -32.95168 -29.86393 -28.73296 -25.23575 -22.13595 -21.83888 -19.33442 -18.92805 -16.43174 -15.05763 -14.64021 -14.21548 -13.74082 -13.13347 -12.69018 -12.45975 -11.83226 -11.41974 -11.12930 -11.00599 -10.76013 -10.67204 -10.16121 -10.04789 -9.53790 -9.41452 -8.99698 -8.49417 -8.37309 -7.49899 -5.97084 -4.03569 3.10459 3.31455 3.35881 3.38969 4.43871 5.02949 5.31114 5.56937 5.76874 5.93565 6.08432 6.16722 6.31503 6.41946 6.49095 6.54261 6.70422 6.89879 7.06793 7.26789 7.38437 7.53530 7.61617 7.78311 7.95041 7.99513 8.13978 8.45278 8.99610 9.60789 11.07423 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.039576 B = 0.016621 C = 0.012447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.332202 B = 1684.227373 C = 2248.927938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.097 4.097 3 C -0.094 4.094 4 H 0.059 0.941 5 C 0.066 3.934 6 N -0.691 5.691 7 C 0.051 3.949 8 C -0.145 4.145 9 C 0.061 3.939 10 H 0.026 0.974 11 C -0.507 4.507 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.889 3.111 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 H 0.084 0.916 20 H 0.087 0.913 21 H 0.097 0.903 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.331 0.669 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.034 0.966 29 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.980 0.278 -6.179 6.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.116 4.116 3 C -0.114 4.114 4 H 0.077 0.923 5 C -0.063 4.063 6 N -0.318 5.318 7 C -0.078 4.078 8 C -0.185 4.185 9 C 0.043 3.957 10 H 0.044 0.956 11 C -0.546 4.546 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.717 3.283 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.204 1.204 19 H 0.102 0.898 20 H 0.105 0.895 21 H 0.116 0.884 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.147 0.853 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.052 0.948 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.311 0.061 -6.471 6.603 hybrid contribution -1.283 0.095 1.833 2.240 sum -2.594 0.156 -4.638 5.317 Atomic orbital electron populations 1.23508 0.96046 1.00410 1.06223 1.22752 0.95483 0.98223 0.95130 1.21262 0.97795 0.94566 0.97818 0.92291 1.21989 0.95468 0.92575 0.96306 1.60864 1.23949 1.04343 1.42648 1.22136 0.95519 1.00502 0.89612 1.22284 0.99516 0.98930 0.97726 1.18636 0.92981 0.93870 0.90242 0.95616 1.21174 0.93173 1.49692 0.90522 0.92674 1.24955 0.94885 0.95281 0.98893 1.69866 1.09073 1.50797 1.23394 0.86710 0.80447 0.78569 0.82592 1.20348 1.21344 1.20412 0.89776 0.89465 0.88448 0.91659 0.92297 0.85290 0.92633 0.91943 0.88646 0.94766 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.02 14.30 29.02 0.41 -3.60 15 2 C -0.10 -1.88 7.98 -36.02 -0.29 -2.17 15 3 C -0.09 -1.93 2.09 -91.69 -0.19 -2.12 15 4 H 0.06 1.24 7.79 -51.93 -0.40 0.84 15 5 C 0.07 1.20 5.82 -3.83 -0.02 1.17 15 6 N -0.69 -12.36 6.87 -113.81 -0.78 -13.14 15 7 C 0.05 1.00 6.55 -3.83 -0.03 0.98 15 8 C -0.15 -3.37 5.10 -26.65 -0.14 -3.51 15 9 C 0.06 1.50 1.66 -91.65 -0.15 1.34 15 10 H 0.03 0.70 8.14 -51.93 -0.42 0.27 15 11 C -0.51 -13.84 8.03 -34.44 -0.28 -14.11 15 12 H 0.06 1.51 7.50 -52.49 -0.39 1.12 15 13 C 0.06 1.68 5.30 -17.82 -0.09 1.59 15 14 N -0.89 -25.42 11.35 55.43 0.63 -24.79 15 15 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 15 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 19 H 0.08 1.33 8.06 -52.48 -0.42 0.91 15 20 H 0.09 1.53 7.84 -52.49 -0.41 1.12 15 21 H 0.10 1.83 8.06 -52.49 -0.42 1.41 15 22 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.33 5.55 8.86 -39.29 -0.35 5.20 15 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 15 27 H 0.10 2.49 6.15 -51.93 -0.32 2.17 15 28 H 0.03 0.80 8.14 -51.93 -0.42 0.37 15 29 H 0.26 7.11 8.31 -40.82 -0.34 6.78 15 LS Contribution 237.32 15.07 3.58 3.58 Total: -1.00 -27.74 237.32 -6.76 -34.50 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.39 Total: 3.79 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -0.77 Total: -20.43 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: -0.15 Total: -37.93 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.74 -6.76 -34.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238108713.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.533 kcal (2) G-P(sol) polarization free energy of solvation -27.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds