Wall clock time and date at job start Mon Mar 30 2020 01:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50699 * 119.99883 * 2 1 4 4 H 1.08996 * 109.54125 * 359.90512 * 3 2 1 5 5 C 1.53041 * 109.50512 * 239.80403 * 3 2 1 6 6 N 1.46847 * 109.51486 * 180.87868 * 5 3 2 7 7 C 1.46847 * 111.20163 * 61.75514 * 6 5 3 8 8 C 1.53044 * 109.51335 * 298.24410 * 7 6 5 9 9 C 1.53119 * 109.27589 * 59.18419 * 8 7 6 10 10 H 1.08993 * 109.52284 * 62.25342 * 9 8 7 11 11 C 1.50703 * 109.51728 * 182.37636 * 9 8 7 12 12 H 1.07995 * 119.99773 * 120.00133 * 11 9 8 13 13 C 1.37875 * 120.00103 * 299.99922 * 11 9 8 14 14 N 1.31514 * 119.99903 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00277 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46994 * 59.99589 * 15 13 11 17 17 H 1.48494 * 109.47456 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46869 * 300.00059 * 15 13 11 19 19 H 1.08006 * 119.99923 * 179.97438 * 1 2 3 20 20 H 1.07999 * 120.00245 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.00219 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.45785 * 300.89372 * 5 3 2 23 23 H 1.08995 * 109.46178 * 60.87456 * 5 3 2 24 24 H 1.00902 * 111.00813 * 297.64967 * 6 5 3 25 25 H 1.09002 * 109.46448 * 178.23132 * 7 6 5 26 26 H 1.08994 * 109.45958 * 58.25497 * 7 6 5 27 27 H 1.09000 * 109.49745 * 179.12223 * 8 7 6 28 28 H 1.08996 * 109.50070 * 299.23917 * 8 7 6 29 29 H 0.97007 * 120.00032 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3561 2.1344 -0.0017 5 6 2.9472 1.3849 -1.2468 6 7 3.6974 2.6472 -1.2364 7 6 4.5856 2.7276 -0.0698 8 6 3.7506 2.6879 1.2122 9 6 2.9440 1.3869 1.2499 10 1 3.6253 0.5365 1.2720 11 6 2.0756 1.3686 2.4815 12 1 1.0022 1.3002 2.3843 13 6 2.6514 1.4391 3.7322 14 7 3.9586 1.5218 3.8506 15 14 1.5751 1.4156 5.2587 16 1 0.7937 0.1532 5.2941 17 1 2.4309 1.5015 6.4692 18 1 0.6449 2.5727 5.2263 19 1 -0.5400 -0.9354 -0.0004 20 1 -0.5400 0.9353 -0.0004 21 1 1.8500 -0.9353 -0.0004 22 1 3.6452 0.5476 -1.2514 23 1 2.3220 1.3414 -2.1386 24 1 3.0732 3.4393 -1.2708 25 1 5.1504 3.6591 -0.1067 26 1 5.2757 1.8839 -0.0801 27 1 4.4112 2.7318 2.0781 28 1 3.0699 3.5389 1.2295 29 1 4.3638 1.5710 4.7306 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238108713.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:03 Heat of formation + Delta-G solvation = -14.758816 kcal Electronic energy + Delta-G solvation = -11226.191071 eV Core-core repulsion = 9341.050783 eV Total energy + Delta-G solvation = -1885.140288 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.86155 -35.26273 -34.84137 -31.72594 -30.30464 -27.20052 -23.73166 -23.58792 -21.06970 -20.47930 -18.46520 -16.86056 -16.31458 -15.90454 -15.28967 -14.93189 -14.31635 -14.24809 -13.66542 -13.00895 -12.93090 -12.72598 -12.56688 -12.41188 -12.00396 -11.78369 -11.36158 -11.21968 -10.82371 -10.46559 -10.07347 -9.10390 -8.05627 -6.20490 1.38477 1.38787 1.46524 1.62961 2.41689 3.18563 3.54509 4.01910 4.26332 4.39323 4.51629 4.67502 4.72869 4.77889 4.82881 4.99467 5.13502 5.23697 5.29065 5.44015 5.62484 5.84085 5.96471 5.96967 6.12043 6.27512 6.39533 6.58571 6.90330 7.46708 8.95476 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.039576 B = 0.016621 C = 0.012447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.332202 B = 1684.227373 C = 2248.927938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.124 4.124 3 C -0.086 4.086 4 H 0.053 0.947 5 C 0.072 3.928 6 N -0.681 5.681 7 C 0.063 3.937 8 C -0.138 4.138 9 C 0.059 3.941 10 H -0.009 1.009 11 C -0.521 4.521 12 H 0.050 0.950 13 C 0.012 3.988 14 N -0.918 5.918 15 Si 0.947 3.053 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.273 1.273 19 H 0.107 0.893 20 H 0.090 0.910 21 H 0.098 0.902 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.341 0.659 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.027 0.973 29 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.035 0.399 -6.972 7.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.143 4.143 3 C -0.106 4.106 4 H 0.071 0.929 5 C -0.058 4.058 6 N -0.308 5.308 7 C -0.067 4.067 8 C -0.178 4.178 9 C 0.040 3.960 10 H 0.009 0.991 11 C -0.559 4.559 12 H 0.068 0.932 13 C -0.187 4.187 14 N -0.558 5.558 15 Si 0.773 3.227 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 H 0.125 0.875 20 H 0.108 0.892 21 H 0.117 0.883 22 H 0.079 0.921 23 H 0.105 0.895 24 H 0.159 0.841 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.046 0.954 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.378 0.187 -7.279 7.660 hybrid contribution -0.993 0.041 2.072 2.298 sum -3.371 0.228 -5.207 6.207 Atomic orbital electron populations 1.23735 0.95539 1.01671 1.03502 1.22759 0.96195 0.97733 0.97584 1.21111 0.97393 0.95131 0.96939 0.92857 1.21993 0.95258 0.92418 0.96133 1.60856 1.24087 1.04829 1.41043 1.21977 0.95196 1.01275 0.88221 1.22129 0.99111 0.97987 0.98563 1.18582 0.92856 0.92985 0.91576 0.99062 1.21500 0.93244 1.49298 0.91900 0.93211 1.25687 0.96022 0.95252 1.01698 1.70005 1.10388 1.51572 1.23792 0.85788 0.78925 0.78653 0.79354 1.19943 1.21025 1.19858 0.87496 0.89173 0.88345 0.92106 0.89531 0.84143 0.90557 0.92714 0.91934 0.95392 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.92 14.30 67.79 0.97 -5.95 15 2 C -0.12 -4.64 7.98 25.65 0.20 -4.44 15 3 C -0.09 -3.43 2.09 -11.49 -0.02 -3.45 15 4 H 0.05 2.18 7.79 -2.39 -0.02 2.16 15 5 C 0.07 2.44 5.82 86.33 0.50 2.95 15 6 N -0.68 -22.89 6.87 -513.99 -3.53 -26.42 15 7 C 0.06 2.39 6.55 86.33 0.57 2.96 15 8 C -0.14 -6.47 5.10 30.65 0.16 -6.32 15 9 C 0.06 2.90 1.66 -11.46 -0.02 2.88 15 10 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 15 11 C -0.52 -28.62 8.03 25.60 0.21 -28.42 15 12 H 0.05 2.72 7.50 -2.91 -0.02 2.70 15 13 C 0.01 0.65 5.30 84.65 0.45 1.09 15 14 N -0.92 -53.28 11.35 21.45 0.24 -53.04 15 15 Si 0.95 44.18 29.54 68.60 2.03 46.21 15 16 H -0.27 -12.53 7.11 99.48 0.71 -11.83 15 17 H -0.28 -13.05 7.11 99.48 0.71 -12.35 15 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 15 19 H 0.11 3.06 8.06 -2.91 -0.02 3.03 15 20 H 0.09 2.95 7.84 -2.91 -0.02 2.92 15 21 H 0.10 3.62 8.06 -2.91 -0.02 3.60 15 22 H 0.06 2.14 8.14 -2.38 -0.02 2.12 15 23 H 0.09 2.52 8.14 -2.39 -0.02 2.50 15 24 H 0.34 10.56 8.86 -89.69 -0.79 9.76 15 25 H 0.08 2.59 8.14 -2.39 -0.02 2.57 15 26 H 0.05 2.17 8.14 -2.39 -0.02 2.15 15 27 H 0.06 3.34 6.15 -2.39 -0.01 3.33 15 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 15 29 H 0.26 14.41 8.31 -92.70 -0.77 13.64 15 Total: -1.00 -58.67 237.32 2.07 -56.60 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.31 Total: 15.35 kcal Atomic # 6 Polarization: -41.71 SS G_CDS: 3.01 Total: -38.70 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -3.29 Total: -79.46 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -58.67 2.07 -56.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238108713.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.843 kcal (2) G-P(sol) polarization free energy of solvation -58.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds