Wall clock time and date at job start Mon Mar 30 2020 01:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00037 * 2 1 4 4 H 1.08997 * 109.53117 * 0.10388 * 3 2 1 5 5 C 1.53034 * 109.50413 * 239.99994 * 3 2 1 6 6 N 1.46847 * 109.51345 * 180.87642 * 5 3 2 7 7 C 1.46843 * 111.20124 * 61.74903 * 6 5 3 8 8 C 1.53042 * 109.52278 * 298.25596 * 7 6 5 9 9 H 1.08998 * 109.50897 * 299.20258 * 8 7 6 10 10 C 1.50695 * 109.50537 * 179.12046 * 8 7 6 11 11 H 1.08003 * 119.99747 * 240.00742 * 10 8 7 12 12 C 1.37871 * 120.00136 * 60.00204 * 10 8 7 13 13 N 1.31509 * 119.99954 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00204 * 180.02562 * 12 10 8 15 15 H 1.48510 * 109.47228 * 89.99999 * 14 12 10 16 16 H 1.48495 * 109.47084 * 209.99664 * 14 12 10 17 17 H 1.48501 * 109.47139 * 330.00019 * 14 12 10 18 18 C 1.53123 * 109.49150 * 120.20164 * 3 2 1 19 19 H 1.07998 * 119.99829 * 180.02562 * 1 2 3 20 20 H 1.07991 * 119.99862 * 359.97438 * 1 2 3 21 21 H 1.08003 * 120.00130 * 179.97438 * 2 1 3 22 22 H 1.09002 * 109.46271 * 60.86362 * 5 3 2 23 23 H 1.08994 * 109.46242 * 300.88661 * 5 3 2 24 24 H 1.00902 * 110.99940 * 185.84650 * 6 5 3 25 25 H 1.08993 * 109.46313 * 58.27251 * 7 6 5 26 26 H 1.09000 * 109.46480 * 178.25361 * 7 6 5 27 27 H 0.97009 * 120.00322 * 180.02562 * 13 12 10 28 28 H 1.09003 * 109.53012 * 57.70331 * 18 3 2 29 29 H 1.08997 * 109.57453 * 297.53608 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3561 2.1343 0.0019 5 6 2.9436 1.3870 -1.2493 6 7 3.6938 2.6493 -1.2389 7 6 4.5854 2.7278 -0.0748 8 6 3.7543 2.6857 1.2096 9 1 3.0738 3.5369 1.2309 10 6 4.6710 2.7444 2.4043 11 1 4.6762 1.9366 3.1211 12 6 5.5031 3.8292 2.5820 13 7 5.4972 4.8125 1.7088 14 14 6.6400 3.9017 4.0625 15 1 7.9414 3.2744 3.7184 16 1 6.8602 5.3186 4.4485 17 1 6.0222 3.1697 5.1973 18 6 2.9478 1.3845 1.2475 19 1 -0.5400 -0.9353 0.0004 20 1 -0.5399 0.9352 0.0004 21 1 1.8500 -0.9353 0.0004 22 1 2.3157 1.3449 -2.1393 23 1 3.6416 0.5498 -1.2573 24 1 4.2092 2.7707 -2.0979 25 1 5.2756 1.8843 -0.0885 26 1 5.1497 3.6596 -0.1116 27 1 6.0829 5.5757 1.8336 28 1 3.6293 0.5340 1.2659 29 1 2.3224 1.3695 2.1401 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238108785.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:51 Heat of formation + Delta-G solvation = 4.058142 kcal Electronic energy + Delta-G solvation = -11018.221807 eV Core-core repulsion = 9133.897483 eV Total energy + Delta-G solvation = -1884.324324 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.98056 -33.99439 -32.79331 -30.42946 -28.63151 -24.87621 -22.64015 -21.76610 -19.33428 -18.68687 -16.40729 -15.28667 -14.53542 -14.15445 -13.72563 -13.19765 -12.88375 -12.59550 -12.13790 -11.96174 -10.96395 -10.94575 -10.68003 -10.51908 -10.17477 -10.09176 -9.64020 -9.24717 -8.87260 -8.64344 -8.35288 -7.48347 -5.97125 -4.03922 2.61590 3.31269 3.38208 3.41683 4.44447 5.02694 5.31408 5.44038 5.55414 5.74786 5.78426 6.07657 6.20574 6.32112 6.46329 6.67107 6.80356 6.92049 6.97136 7.10123 7.14586 7.23091 7.71960 7.83792 8.02776 8.21171 8.31593 8.53449 9.01499 9.60915 11.08613 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.062581 B = 0.011490 C = 0.010209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.313569 B = 2436.263186 C = 2741.970932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.132 4.132 3 C -0.063 4.063 4 H 0.075 0.925 5 C 0.073 3.927 6 N -0.695 5.695 7 C 0.063 3.937 8 C 0.053 3.947 9 H 0.034 0.966 10 C -0.515 4.515 11 H 0.055 0.945 12 C 0.061 3.939 13 N -0.888 5.888 14 Si 0.891 3.109 15 H -0.282 1.282 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.100 4.100 19 H 0.090 0.910 20 H 0.094 0.906 21 H 0.101 0.899 22 H 0.056 0.944 23 H 0.018 0.982 24 H 0.324 0.676 25 H 0.001 0.999 26 H 0.103 0.897 27 H 0.260 0.740 28 H 0.044 0.956 29 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 -6.220 -4.045 8.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.151 4.151 3 C -0.082 4.082 4 H 0.093 0.907 5 C -0.057 4.057 6 N -0.324 5.324 7 C -0.065 4.065 8 C 0.034 3.966 9 H 0.052 0.948 10 C -0.554 4.554 11 H 0.073 0.927 12 C -0.140 4.140 13 N -0.527 5.527 14 Si 0.719 3.281 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.137 4.137 19 H 0.108 0.892 20 H 0.113 0.887 21 H 0.119 0.881 22 H 0.075 0.925 23 H 0.036 0.964 24 H 0.140 0.860 25 H 0.019 0.981 26 H 0.121 0.879 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.826 -5.681 -3.765 8.351 hybrid contribution 1.388 -0.646 0.531 1.620 sum -3.439 -6.327 -3.234 7.894 Atomic orbital electron populations 1.23736 0.95950 1.01210 1.03749 1.23098 0.95858 0.98680 0.97417 1.20482 0.97224 0.94076 0.96445 0.90668 1.21744 0.95916 0.91111 0.96897 1.60459 1.32235 1.33723 1.06033 1.22281 0.93711 1.01162 0.89375 1.18672 0.93725 0.91960 0.92215 0.94813 1.21212 1.21666 1.04664 1.07880 0.92668 1.24996 0.97121 0.95543 0.96332 1.69881 1.38863 1.08677 1.35293 0.86617 0.81111 0.77172 0.83234 1.20774 1.21204 1.19935 1.21681 0.97133 1.00455 0.94468 0.89185 0.88735 0.88065 0.92524 0.96394 0.85972 0.98050 0.87867 0.92979 0.93711 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.89 14.32 29.01 0.42 -2.48 15 2 C -0.13 -2.06 8.78 -36.02 -0.32 -2.37 15 3 C -0.06 -1.19 2.64 -91.69 -0.24 -1.43 15 4 H 0.07 1.47 7.79 -51.93 -0.40 1.07 15 5 C 0.07 1.33 5.82 -3.84 -0.02 1.31 15 6 N -0.69 -14.34 6.84 -113.82 -0.78 -15.12 15 7 C 0.06 1.53 5.60 -3.83 -0.02 1.51 15 8 C 0.05 1.37 2.26 -91.69 -0.21 1.16 15 9 H 0.03 0.96 8.14 -51.93 -0.42 0.54 15 10 C -0.52 -14.40 8.56 -34.44 -0.29 -14.69 15 11 H 0.06 1.52 7.74 -52.48 -0.41 1.12 15 12 C 0.06 1.71 5.30 -17.82 -0.09 1.62 15 13 N -0.89 -25.58 11.33 55.43 0.63 -24.95 15 14 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 15 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 17 H -0.27 -6.52 7.11 56.52 0.40 -6.11 15 18 C -0.10 -2.18 4.49 -26.60 -0.12 -2.30 15 19 H 0.09 1.05 8.06 -52.49 -0.42 0.63 15 20 H 0.09 1.29 7.83 -52.49 -0.41 0.88 15 21 H 0.10 1.47 8.06 -52.48 -0.42 1.04 15 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 15 24 H 0.32 5.89 8.90 -39.29 -0.35 5.54 15 25 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 15 26 H 0.10 2.79 6.09 -51.93 -0.32 2.48 15 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 28 H 0.04 0.97 8.14 -51.93 -0.42 0.55 15 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 15 LS Contribution 238.44 15.07 3.59 3.59 Total: -1.00 -28.44 238.44 -6.89 -35.33 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.41 Total: 2.45 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -0.90 Total: -17.67 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: -0.15 Total: -40.06 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -28.44 -6.89 -35.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238108785.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.388 kcal (2) G-P(sol) polarization free energy of solvation -28.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds