Wall clock time and date at job start Mon Mar 30 2020 01:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00037 * 2 1 4 4 H 1.08997 * 109.53117 * 0.10388 * 3 2 1 5 5 C 1.53034 * 109.50413 * 239.99994 * 3 2 1 6 6 N 1.46847 * 109.51345 * 180.87642 * 5 3 2 7 7 C 1.46843 * 111.20124 * 61.74903 * 6 5 3 8 8 C 1.53042 * 109.52278 * 298.25596 * 7 6 5 9 9 H 1.08998 * 109.50897 * 299.20258 * 8 7 6 10 10 C 1.50695 * 109.50537 * 179.12046 * 8 7 6 11 11 H 1.08003 * 119.99747 * 240.00742 * 10 8 7 12 12 C 1.37871 * 120.00136 * 60.00204 * 10 8 7 13 13 N 1.31509 * 119.99954 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00204 * 180.02562 * 12 10 8 15 15 H 1.48510 * 109.47228 * 89.99999 * 14 12 10 16 16 H 1.48495 * 109.47084 * 209.99664 * 14 12 10 17 17 H 1.48501 * 109.47139 * 330.00019 * 14 12 10 18 18 C 1.53123 * 109.49150 * 120.20164 * 3 2 1 19 19 H 1.07998 * 119.99829 * 180.02562 * 1 2 3 20 20 H 1.07991 * 119.99862 * 359.97438 * 1 2 3 21 21 H 1.08003 * 120.00130 * 179.97438 * 2 1 3 22 22 H 1.09002 * 109.46271 * 60.86362 * 5 3 2 23 23 H 1.08994 * 109.46242 * 300.88661 * 5 3 2 24 24 H 1.00902 * 110.99940 * 185.84650 * 6 5 3 25 25 H 1.08993 * 109.46313 * 58.27251 * 7 6 5 26 26 H 1.09000 * 109.46480 * 178.25361 * 7 6 5 27 27 H 0.97009 * 120.00322 * 180.02562 * 13 12 10 28 28 H 1.09003 * 109.53012 * 57.70331 * 18 3 2 29 29 H 1.08997 * 109.57453 * 297.53608 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3561 2.1343 0.0019 5 6 2.9436 1.3870 -1.2493 6 7 3.6938 2.6493 -1.2389 7 6 4.5854 2.7278 -0.0748 8 6 3.7543 2.6857 1.2096 9 1 3.0738 3.5369 1.2309 10 6 4.6710 2.7444 2.4043 11 1 4.6762 1.9366 3.1211 12 6 5.5031 3.8292 2.5820 13 7 5.4972 4.8125 1.7088 14 14 6.6400 3.9017 4.0625 15 1 7.9414 3.2744 3.7184 16 1 6.8602 5.3186 4.4485 17 1 6.0222 3.1697 5.1973 18 6 2.9478 1.3845 1.2475 19 1 -0.5400 -0.9353 0.0004 20 1 -0.5399 0.9352 0.0004 21 1 1.8500 -0.9353 0.0004 22 1 2.3157 1.3449 -2.1393 23 1 3.6416 0.5498 -1.2573 24 1 4.2092 2.7707 -2.0979 25 1 5.2756 1.8843 -0.0885 26 1 5.1497 3.6596 -0.1116 27 1 6.0829 5.5757 1.8336 28 1 3.6293 0.5340 1.2659 29 1 2.3224 1.3695 2.1401 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238108785.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:51 Heat of formation + Delta-G solvation = -14.629321 kcal Electronic energy + Delta-G solvation = -11019.032156 eV Core-core repulsion = 9133.897483 eV Total energy + Delta-G solvation = -1885.134673 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.65077 -35.61852 -34.61479 -32.28796 -30.19930 -26.90715 -24.38861 -23.40499 -20.68604 -20.45920 -18.40367 -17.11141 -16.38065 -15.63541 -15.17333 -14.99504 -14.51492 -14.37806 -14.06047 -13.46386 -12.86047 -12.58508 -12.35753 -12.30790 -12.03091 -11.71333 -11.50524 -10.97293 -10.77350 -10.47309 -10.09519 -9.18618 -8.09887 -6.25585 1.41187 1.41799 1.46961 1.52757 2.42700 3.14256 3.56108 4.04303 4.15212 4.23629 4.50104 4.55294 4.64485 4.87583 4.94300 4.99354 5.05280 5.20557 5.29249 5.34140 5.58553 5.76467 5.88739 6.00096 6.02477 6.21022 6.49075 6.72651 6.88810 7.43272 8.94579 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.062581 B = 0.011490 C = 0.010209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.313569 B = 2436.263186 C = 2741.970932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.152 4.152 3 C -0.058 4.058 4 H 0.061 0.939 5 C 0.073 3.927 6 N -0.701 5.701 7 C 0.079 3.921 8 C 0.049 3.951 9 H -0.006 1.006 10 C -0.541 4.541 11 H 0.052 0.948 12 C 0.014 3.986 13 N -0.915 5.915 14 Si 0.957 3.043 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.269 1.269 18 C -0.093 4.093 19 H 0.119 0.881 20 H 0.093 0.907 21 H 0.115 0.885 22 H 0.086 0.914 23 H 0.024 0.976 24 H 0.340 0.660 25 H -0.006 1.006 26 H 0.072 0.928 27 H 0.262 0.738 28 H 0.044 0.956 29 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.959 -7.572 -4.230 9.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.171 4.171 3 C -0.077 4.077 4 H 0.079 0.921 5 C -0.056 4.056 6 N -0.332 5.332 7 C -0.051 4.051 8 C 0.030 3.970 9 H 0.012 0.988 10 C -0.579 4.579 11 H 0.070 0.930 12 C -0.185 4.185 13 N -0.554 5.554 14 Si 0.782 3.218 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.194 1.194 18 C -0.131 4.131 19 H 0.137 0.863 20 H 0.112 0.888 21 H 0.133 0.867 22 H 0.104 0.896 23 H 0.043 0.957 24 H 0.157 0.843 25 H 0.012 0.988 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.378 -7.044 -3.966 9.709 hybrid contribution 1.479 -0.207 0.560 1.595 sum -3.899 -7.251 -3.405 8.909 Atomic orbital electron populations 1.23987 0.95365 1.02574 1.00347 1.22918 0.96378 0.97338 1.00425 1.20367 0.96661 0.95741 0.94891 0.92071 1.21860 0.95970 0.89846 0.97960 1.60339 1.31667 1.35709 1.05491 1.21861 0.93586 0.99148 0.90461 1.18619 0.93348 0.92522 0.92489 0.98788 1.21566 1.22543 1.04957 1.08851 0.92952 1.25793 0.98533 0.95108 0.99108 1.70024 1.39475 1.09090 1.36823 0.85575 0.79128 0.77295 0.79771 1.19948 1.20746 1.19351 1.21542 0.97142 0.98079 0.96299 0.86312 0.88820 0.86672 0.89592 0.95734 0.84269 0.98809 0.90962 0.92886 0.93687 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.49 14.32 67.78 0.97 -3.52 15 2 C -0.15 -4.33 8.78 25.65 0.23 -4.10 15 3 C -0.06 -2.09 2.64 -11.49 -0.03 -2.12 15 4 H 0.06 2.36 7.79 -2.39 -0.02 2.34 15 5 C 0.07 2.52 5.82 86.32 0.50 3.03 15 6 N -0.70 -28.63 6.84 -514.02 -3.52 -32.15 15 7 C 0.08 3.90 5.60 86.33 0.48 4.39 15 8 C 0.05 2.60 2.26 -11.49 -0.03 2.57 15 9 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 15 10 C -0.54 -30.82 8.56 25.60 0.22 -30.60 15 11 H 0.05 2.93 7.74 -2.91 -0.02 2.91 15 12 C 0.01 0.76 5.30 84.65 0.45 1.21 15 13 N -0.91 -53.86 11.33 21.44 0.24 -53.62 15 14 Si 0.96 44.11 29.54 68.60 2.03 46.14 15 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 17 H -0.27 -12.06 7.11 99.48 0.71 -11.36 15 18 C -0.09 -4.07 4.49 30.68 0.14 -3.93 15 19 H 0.12 2.23 8.06 -2.91 -0.02 2.21 15 20 H 0.09 2.29 7.83 -2.92 -0.02 2.26 15 21 H 0.12 2.97 8.06 -2.91 -0.02 2.95 15 22 H 0.09 2.51 8.14 -2.39 -0.02 2.49 15 23 H 0.02 0.83 8.14 -2.39 -0.02 0.81 15 24 H 0.34 12.02 8.90 -89.69 -0.80 11.22 15 25 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 15 26 H 0.07 4.04 6.09 -2.39 -0.01 4.03 15 27 H 0.26 14.60 8.31 -92.70 -0.77 13.82 15 28 H 0.04 1.94 8.14 -2.39 -0.02 1.92 15 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 15 Total: -1.00 -61.47 238.44 1.99 -59.47 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.31 Total: 13.23 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: 2.93 Total: -33.08 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -3.28 Total: -85.77 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -61.47 1.99 -59.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238108785.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.846 kcal (2) G-P(sol) polarization free energy of solvation -61.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds