Wall clock time and date at job start Mon Mar 30 2020 01:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00251 * 2 1 4 4 H 1.09004 * 109.53192 * 0.10211 * 3 2 1 5 5 C 1.53037 * 109.50186 * 120.19930 * 3 2 1 6 6 N 1.46849 * 109.52258 * 179.12317 * 5 3 2 7 7 C 1.46845 * 111.19460 * 298.25612 * 6 5 3 8 8 C 1.53038 * 109.52546 * 61.74494 * 7 6 5 9 9 C 1.53115 * 109.50467 * 240.00376 * 3 2 1 10 10 H 1.09001 * 109.57414 * 302.34016 * 9 3 2 11 11 C 1.50694 * 109.52330 * 62.49916 * 9 3 2 12 12 H 1.08000 * 120.00563 * 359.68330 * 11 9 3 13 13 C 1.37885 * 119.99902 * 179.68494 * 11 9 3 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 H 1.08004 * 119.99968 * 359.97438 * 1 2 3 20 20 H 1.08000 * 120.00251 * 180.02562 * 1 2 3 21 21 H 1.08000 * 119.99545 * 180.02562 * 2 1 3 22 22 H 1.08993 * 109.46487 * 59.10191 * 5 3 2 23 23 H 1.09003 * 109.45197 * 299.13022 * 5 3 2 24 24 H 1.00897 * 111.00028 * 174.15790 * 6 5 3 25 25 H 1.09001 * 109.46075 * 301.72601 * 7 6 5 26 26 H 1.09003 * 109.46158 * 181.76183 * 7 6 5 27 27 H 1.08994 * 109.50023 * 180.87640 * 8 7 6 28 28 H 1.08996 * 109.50481 * 60.75847 * 8 7 6 29 29 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3561 2.1344 0.0018 5 6 2.9474 1.3847 1.2468 6 7 3.6978 2.6469 1.2366 7 6 4.5858 2.7273 0.0699 8 6 3.7509 2.6878 -1.2121 9 6 2.9441 1.3870 -1.2500 10 1 3.6253 0.5364 -1.2731 11 6 2.0745 1.3694 -2.4806 12 1 1.0011 1.3010 -2.3825 13 6 2.6492 1.4406 -3.7319 14 7 3.9562 1.5244 -3.8514 15 14 1.5713 1.4181 -5.2573 16 1 1.3716 0.0153 -5.7017 17 1 0.2552 2.0298 -4.9426 18 1 2.2302 2.1914 -6.3404 19 1 -0.5400 0.9353 0.0004 20 1 -0.5400 -0.9353 0.0004 21 1 1.8499 -0.9354 -0.0004 22 1 3.6452 0.5474 1.2514 23 1 2.3220 1.3411 2.1385 24 1 4.2157 2.7666 2.0942 25 1 5.2759 1.8837 0.0800 26 1 5.1506 3.6589 0.1069 27 1 4.4114 2.7318 -2.0779 28 1 3.0701 3.5388 -1.2293 29 1 4.3605 1.5742 -4.7318 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238122204.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:06 Heat of formation + Delta-G solvation = -12.448283 kcal Electronic energy + Delta-G solvation = -11205.358235 eV Core-core repulsion = 9320.318139 eV Total energy + Delta-G solvation = -1885.040096 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.67375 -35.34172 -34.81241 -31.89129 -30.28597 -27.34885 -23.81025 -23.52492 -20.64112 -20.37307 -18.46542 -17.21446 -16.45397 -15.63440 -15.12063 -14.83534 -14.57699 -14.22959 -14.11017 -13.04415 -12.88295 -12.67612 -12.50622 -12.18210 -12.03404 -11.75346 -11.38385 -11.07790 -10.58984 -10.39563 -9.89102 -9.29679 -8.05655 -6.16941 1.39890 1.41193 1.51124 1.63759 2.44747 3.21369 3.43291 4.16620 4.25595 4.35481 4.47977 4.58147 4.71899 4.76782 4.91295 5.06649 5.13785 5.21711 5.28799 5.50252 5.66977 5.86709 5.99264 6.01507 6.15297 6.27992 6.43752 6.69847 6.93654 7.49661 8.98896 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.039659 B = 0.016547 C = 0.012376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.846660 B = 1691.704026 C = 2261.866759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.051 4.051 4 H 0.053 0.947 5 C 0.074 3.926 6 N -0.691 5.691 7 C 0.065 3.935 8 C -0.103 4.103 9 C 0.057 3.943 10 H -0.011 1.011 11 C -0.518 4.518 12 H 0.051 0.949 13 C 0.010 3.990 14 N -0.920 5.920 15 Si 0.948 3.052 16 H -0.277 1.277 17 H -0.270 1.270 18 H -0.284 1.284 19 H 0.090 0.910 20 H 0.110 0.890 21 H 0.099 0.901 22 H 0.022 0.978 23 H 0.086 0.914 24 H 0.350 0.650 25 H 0.015 0.985 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.027 0.973 29 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.803 -0.477 7.902 8.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.146 4.146 3 C -0.070 4.070 4 H 0.072 0.928 5 C -0.056 4.056 6 N -0.323 5.323 7 C -0.064 4.064 8 C -0.141 4.141 9 C 0.038 3.962 10 H 0.007 0.993 11 C -0.556 4.556 12 H 0.069 0.931 13 C -0.188 4.188 14 N -0.560 5.560 15 Si 0.775 3.225 16 H -0.203 1.203 17 H -0.195 1.195 18 H -0.210 1.210 19 H 0.108 0.892 20 H 0.128 0.872 21 H 0.117 0.883 22 H 0.040 0.960 23 H 0.105 0.895 24 H 0.168 0.832 25 H 0.034 0.966 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.046 0.954 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.167 -0.102 7.473 7.782 hybrid contribution 0.419 -0.685 -0.980 1.267 sum -1.748 -0.787 6.494 6.771 Atomic orbital electron populations 1.23759 0.95479 1.01759 1.02978 1.22778 0.96276 0.97595 0.97976 1.20394 0.96859 0.94668 0.95086 0.92812 1.21862 0.96001 0.89672 0.98021 1.60222 1.30817 1.35918 1.05333 1.21919 0.93646 0.99534 0.91271 1.21494 0.98538 0.98152 0.95938 1.18608 0.92954 0.92845 0.91769 0.99280 1.21521 0.93295 1.48991 0.91799 0.93094 1.25703 0.96067 0.95258 1.01725 1.70011 1.10462 1.51853 1.23676 0.85702 0.79216 0.78013 0.79618 1.20325 1.19500 1.20970 0.89197 0.87226 0.88278 0.95965 0.89545 0.83165 0.96639 0.90536 0.91852 0.95363 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.89 14.29 67.78 0.97 -5.92 15 2 C -0.13 -4.89 7.98 25.65 0.20 -4.68 15 3 C -0.05 -2.16 2.10 -11.49 -0.02 -2.18 15 4 H 0.05 2.40 7.79 -2.38 -0.02 2.38 15 5 C 0.07 2.57 5.82 86.33 0.50 3.07 15 6 N -0.69 -23.59 6.85 -514.01 -3.52 -27.11 15 7 C 0.07 2.55 6.55 86.33 0.57 3.11 15 8 C -0.10 -5.03 5.12 30.65 0.16 -4.88 15 9 C 0.06 2.90 1.67 -11.46 -0.02 2.88 15 10 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 15 11 C -0.52 -28.96 8.03 25.60 0.21 -28.76 15 12 H 0.05 2.84 7.49 -2.91 -0.02 2.81 15 13 C 0.01 0.58 5.30 84.66 0.45 1.03 15 14 N -0.92 -53.88 11.35 21.45 0.24 -53.64 15 15 Si 0.95 44.61 29.54 68.60 2.03 46.64 15 16 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 15 18 H -0.28 -13.11 7.11 99.48 0.71 -12.40 15 19 H 0.09 3.04 7.84 -2.91 -0.02 3.01 15 20 H 0.11 3.14 8.06 -2.91 -0.02 3.11 15 21 H 0.10 3.68 8.06 -2.91 -0.02 3.66 15 22 H 0.02 0.78 8.14 -2.39 -0.02 0.76 15 23 H 0.09 2.56 8.14 -2.39 -0.02 2.54 15 24 H 0.35 9.38 8.90 -89.70 -0.80 8.58 15 25 H 0.02 0.61 8.14 -2.39 -0.02 0.59 15 26 H 0.08 2.64 8.14 -2.39 -0.02 2.62 15 27 H 0.06 3.47 6.15 -2.39 -0.01 3.46 15 28 H 0.03 1.41 8.14 -2.39 -0.02 1.39 15 29 H 0.26 14.46 8.31 -92.71 -0.77 13.69 15 Total: -1.00 -60.70 237.35 2.07 -58.63 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.31 Total: 11.81 kcal Atomic # 6 Polarization: -39.34 SS G_CDS: 3.01 Total: -36.33 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -3.28 Total: -80.75 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -60.70 2.07 -58.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238122204.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.180 kcal (2) G-P(sol) polarization free energy of solvation -60.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds