Wall clock time and date at job start Mon Mar 30 2020 01:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00282 * 2 1 4 4 H 1.08998 * 109.50224 * 359.91697 * 3 2 1 5 5 C 1.53042 * 109.50537 * 120.00320 * 3 2 1 6 6 N 1.46843 * 109.52278 * 179.12046 * 5 3 2 7 7 C 1.46847 * 111.20124 * 298.25596 * 6 5 3 8 8 C 1.53034 * 109.51345 * 61.74903 * 7 6 5 9 9 H 1.08997 * 109.50952 * 60.75924 * 8 7 6 10 10 C 1.50704 * 109.50413 * 180.87642 * 8 7 6 11 11 H 1.08003 * 120.00124 * 119.99792 * 10 8 7 12 12 C 1.37870 * 120.00192 * 300.00225 * 10 8 7 13 13 N 1.31516 * 120.00507 * 179.97438 * 12 10 8 14 14 Si 1.86810 * 119.99806 * 359.97438 * 12 10 8 15 15 H 1.48501 * 109.46799 * 89.99975 * 14 12 10 16 16 H 1.48498 * 109.47080 * 210.00209 * 14 12 10 17 17 H 1.48496 * 109.47094 * 330.00543 * 14 12 10 18 18 C 1.53123 * 109.27992 * 300.80438 * 8 7 6 19 19 H 1.07997 * 120.00212 * 180.02562 * 1 2 3 20 20 H 1.08000 * 119.99708 * 0.02562 * 1 2 3 21 21 H 1.08009 * 119.99986 * 180.02562 * 2 1 3 22 22 H 1.08993 * 109.46299 * 59.10382 * 5 3 2 23 23 H 1.09004 * 109.45702 * 299.13485 * 5 3 2 24 24 H 1.00898 * 111.00086 * 62.35520 * 6 5 3 25 25 H 1.09002 * 109.46481 * 181.76055 * 7 6 5 26 26 H 1.08994 * 109.46283 * 301.73908 * 7 6 5 27 27 H 0.96997 * 120.00347 * 179.97438 * 13 12 10 28 28 H 1.09003 * 109.53012 * 297.76758 * 18 8 7 29 29 H 1.08997 * 109.57453 * 177.60035 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3557 2.1339 -0.0015 5 6 2.9438 1.3868 1.2493 6 7 3.6941 2.6490 1.2391 7 6 4.5857 2.7275 0.0749 8 6 3.7543 2.6858 -1.2093 9 1 3.0736 3.5368 -1.2300 10 6 4.6708 2.7447 -2.4042 11 1 4.6757 1.9371 -3.1213 12 6 5.5032 3.8293 -2.5818 13 7 6.3034 3.8805 -3.6243 14 14 5.4943 5.2264 -1.3417 15 1 6.4921 4.9497 -0.2772 16 1 5.8404 6.4980 -2.0262 17 1 4.1435 5.3420 -0.7360 18 6 2.9479 1.3847 -1.2476 19 1 -0.5400 -0.9353 0.0004 20 1 -0.5400 0.9353 -0.0004 21 1 1.8501 -0.9354 -0.0004 22 1 3.6416 0.5496 1.2574 23 1 2.3158 1.3447 2.1393 24 1 3.0699 3.4411 1.2705 25 1 5.1503 3.6591 0.1119 26 1 5.2756 1.8838 0.0883 27 1 6.8887 4.6438 -3.7494 28 1 3.6292 0.5341 -1.2661 29 1 2.3216 1.3694 -2.1395 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238122262.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:54 Heat of formation + Delta-G solvation = 9.429269 kcal Electronic energy + Delta-G solvation = -11111.393097 eV Core-core repulsion = 9227.301683 eV Total energy + Delta-G solvation = -1884.091414 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.53152 -34.19694 -32.79654 -30.72104 -29.18533 -24.91386 -23.04121 -21.73893 -19.55129 -19.33254 -16.68816 -15.63915 -14.92069 -14.20259 -14.03842 -13.78145 -13.14262 -12.48563 -12.40892 -11.63968 -11.31918 -11.19055 -10.97244 -10.62653 -10.44820 -10.19787 -9.81374 -9.46089 -9.27776 -8.96014 -8.61862 -7.62995 -6.09592 -4.08850 2.49120 3.27021 3.35858 3.37636 4.37939 4.88059 5.08387 5.21604 5.33716 5.51428 5.66354 5.84417 5.98530 6.09712 6.11238 6.22956 6.43207 6.59485 6.69305 6.77742 6.83462 7.03483 7.11847 7.32764 7.53795 7.79131 7.94476 8.50669 8.94122 9.52124 11.03654 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.060204 B = 0.013190 C = 0.011654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.973731 B = 2122.362156 C = 2401.943302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.129 4.129 3 C -0.106 4.106 4 H 0.066 0.934 5 C 0.072 3.928 6 N -0.695 5.695 7 C 0.050 3.950 8 C -0.018 4.018 9 H 0.024 0.976 10 C -0.512 4.512 11 H 0.073 0.927 12 C 0.069 3.931 13 N -0.901 5.901 14 Si 0.888 3.112 15 H -0.276 1.276 16 H -0.297 1.297 17 H -0.268 1.268 18 C -0.088 4.088 19 H 0.092 0.908 20 H 0.092 0.908 21 H 0.106 0.894 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.331 0.669 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.264 0.736 28 H 0.056 0.944 29 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.954 -3.940 8.339 12.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.148 4.148 3 C -0.126 4.126 4 H 0.085 0.915 5 C -0.058 4.058 6 N -0.321 5.321 7 C -0.078 4.078 8 C -0.038 4.038 9 H 0.042 0.958 10 C -0.551 4.551 11 H 0.091 0.909 12 C -0.133 4.133 13 N -0.539 5.539 14 Si 0.719 3.281 15 H -0.203 1.203 16 H -0.224 1.224 17 H -0.193 1.193 18 C -0.126 4.126 19 H 0.110 0.890 20 H 0.110 0.890 21 H 0.124 0.876 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.148 0.852 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.289 -4.060 8.686 12.044 hybrid contribution -0.552 0.920 -0.265 1.105 sum -7.841 -3.140 8.421 11.927 Atomic orbital electron populations 1.23737 0.95975 1.01247 1.03744 1.23000 0.95756 0.98489 0.97514 1.21297 0.97836 0.94878 0.98622 0.91530 1.21927 0.95199 0.93420 0.95287 1.60835 1.23530 1.03888 1.43875 1.22589 0.95539 1.01374 0.88292 1.19789 0.95227 0.93774 0.95006 0.95773 1.20980 1.20531 1.06420 1.07151 0.90874 1.25042 0.94984 0.97953 0.95303 1.69895 1.24573 1.30889 1.28509 0.86848 0.78838 0.81492 0.80963 1.20279 1.22443 1.19346 1.21472 0.96980 0.99452 0.94652 0.89001 0.88958 0.87638 0.91206 0.91814 0.85246 0.92411 0.91065 0.92609 0.92481 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.65 14.32 29.01 0.42 -2.23 15 2 C -0.13 -1.81 8.78 -36.03 -0.32 -2.13 15 3 C -0.11 -1.73 2.63 -91.69 -0.24 -1.98 15 4 H 0.07 1.09 7.79 -51.93 -0.40 0.69 15 5 C 0.07 1.15 5.82 -3.83 -0.02 1.13 15 6 N -0.69 -12.80 6.87 -113.82 -0.78 -13.58 15 7 C 0.05 1.10 5.31 -3.84 -0.02 1.08 15 8 C -0.02 -0.41 1.84 -91.69 -0.17 -0.58 15 9 H 0.02 0.58 7.21 -51.93 -0.37 0.21 15 10 C -0.51 -14.39 9.15 -34.44 -0.31 -14.71 15 11 H 0.07 2.23 7.99 -52.48 -0.42 1.81 15 12 C 0.07 1.99 5.45 -17.82 -0.10 1.89 15 13 N -0.90 -27.62 13.96 55.43 0.77 -26.85 15 14 Si 0.89 21.99 24.37 -169.99 -4.14 17.85 15 15 H -0.28 -6.70 6.88 56.52 0.39 -6.31 15 16 H -0.30 -7.38 7.11 56.52 0.40 -6.98 15 17 H -0.27 -6.34 6.53 56.52 0.37 -5.97 15 18 C -0.09 -1.76 4.49 -26.60 -0.12 -1.88 15 19 H 0.09 0.99 8.06 -52.49 -0.42 0.57 15 20 H 0.09 1.14 7.83 -52.49 -0.41 0.73 15 21 H 0.11 1.39 8.06 -52.48 -0.42 0.96 15 22 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 24 H 0.33 5.79 8.86 -39.29 -0.35 5.44 15 25 H 0.06 1.35 3.29 -51.93 -0.17 1.17 15 26 H 0.07 1.59 8.14 -51.93 -0.42 1.17 15 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 15 LS Contribution 231.58 15.07 3.49 3.49 Total: -1.00 -29.35 231.58 -5.81 -35.16 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -4.27 Total: 3.34 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -0.88 Total: -19.41 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -0.01 Total: -40.43 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.14 Total: 17.85 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.35 -5.81 -35.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238122262.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.589 kcal (2) G-P(sol) polarization free energy of solvation -29.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds