Wall clock time and date at job start Mon Mar 30 2020 01:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00282 * 2 1 4 4 H 1.08998 * 109.50224 * 359.91697 * 3 2 1 5 5 C 1.53042 * 109.50537 * 120.00320 * 3 2 1 6 6 N 1.46843 * 109.52278 * 179.12046 * 5 3 2 7 7 C 1.46847 * 111.20124 * 298.25596 * 6 5 3 8 8 C 1.53034 * 109.51345 * 61.74903 * 7 6 5 9 9 H 1.08997 * 109.50952 * 60.75924 * 8 7 6 10 10 C 1.50704 * 109.50413 * 180.87642 * 8 7 6 11 11 H 1.08003 * 120.00124 * 119.99792 * 10 8 7 12 12 C 1.37870 * 120.00192 * 300.00225 * 10 8 7 13 13 N 1.31516 * 120.00507 * 179.97438 * 12 10 8 14 14 Si 1.86810 * 119.99806 * 359.97438 * 12 10 8 15 15 H 1.48501 * 109.46799 * 89.99975 * 14 12 10 16 16 H 1.48498 * 109.47080 * 210.00209 * 14 12 10 17 17 H 1.48496 * 109.47094 * 330.00543 * 14 12 10 18 18 C 1.53123 * 109.27992 * 300.80438 * 8 7 6 19 19 H 1.07997 * 120.00212 * 180.02562 * 1 2 3 20 20 H 1.08000 * 119.99708 * 0.02562 * 1 2 3 21 21 H 1.08009 * 119.99986 * 180.02562 * 2 1 3 22 22 H 1.08993 * 109.46299 * 59.10382 * 5 3 2 23 23 H 1.09004 * 109.45702 * 299.13485 * 5 3 2 24 24 H 1.00898 * 111.00086 * 62.35520 * 6 5 3 25 25 H 1.09002 * 109.46481 * 181.76055 * 7 6 5 26 26 H 1.08994 * 109.46283 * 301.73908 * 7 6 5 27 27 H 0.96997 * 120.00347 * 179.97438 * 13 12 10 28 28 H 1.09003 * 109.53012 * 297.76758 * 18 8 7 29 29 H 1.08997 * 109.57453 * 177.60035 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3557 2.1339 -0.0015 5 6 2.9438 1.3868 1.2493 6 7 3.6941 2.6490 1.2391 7 6 4.5857 2.7275 0.0749 8 6 3.7543 2.6858 -1.2093 9 1 3.0736 3.5368 -1.2300 10 6 4.6708 2.7447 -2.4042 11 1 4.6757 1.9371 -3.1213 12 6 5.5032 3.8293 -2.5818 13 7 6.3034 3.8805 -3.6243 14 14 5.4943 5.2264 -1.3417 15 1 6.4921 4.9497 -0.2772 16 1 5.8404 6.4980 -2.0262 17 1 4.1435 5.3420 -0.7360 18 6 2.9479 1.3847 -1.2476 19 1 -0.5400 -0.9353 0.0004 20 1 -0.5400 0.9353 -0.0004 21 1 1.8501 -0.9354 -0.0004 22 1 3.6416 0.5496 1.2574 23 1 2.3158 1.3447 2.1393 24 1 3.0699 3.4411 1.2705 25 1 5.1503 3.6591 0.1119 26 1 5.2756 1.8838 0.0883 27 1 6.8887 4.6438 -3.7494 28 1 3.6292 0.5341 -1.2661 29 1 2.3216 1.3694 -2.1395 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238122262.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:54 Heat of formation + Delta-G solvation = -11.699403 kcal Electronic energy + Delta-G solvation = -11112.309305 eV Core-core repulsion = 9227.301683 eV Total energy + Delta-G solvation = -1885.007622 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.05455 -35.66087 -34.64475 -32.56310 -30.56033 -26.85620 -24.59290 -23.27022 -21.12751 -20.63902 -18.77039 -17.30477 -16.25193 -16.00492 -15.57656 -15.22885 -14.97326 -14.19654 -13.88808 -13.12907 -13.06160 -12.76229 -12.49715 -12.27097 -12.09772 -11.86189 -11.60150 -11.23550 -11.00053 -10.83541 -10.24866 -9.16580 -8.33181 -6.37267 1.30756 1.33633 1.43940 1.45677 2.29105 3.01675 3.45344 3.81643 4.05888 4.27713 4.28713 4.44007 4.54379 4.65021 4.67227 4.78990 4.99014 5.08023 5.12010 5.23973 5.38618 5.57769 5.60428 5.76401 5.95804 6.04305 6.30809 6.50249 6.70903 7.27418 8.83815 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.060204 B = 0.013190 C = 0.011654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.973731 B = 2122.362156 C = 2401.943302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.150 4.150 3 C -0.094 4.094 4 H 0.070 0.930 5 C 0.072 3.928 6 N -0.689 5.689 7 C 0.060 3.940 8 C -0.017 4.017 9 H 0.022 0.978 10 C -0.521 4.521 11 H 0.030 0.970 12 C 0.011 3.989 13 N -0.950 5.950 14 Si 0.954 3.046 15 H -0.265 1.265 16 H -0.298 1.298 17 H -0.247 1.247 18 C -0.085 4.085 19 H 0.114 0.886 20 H 0.096 0.904 21 H 0.113 0.887 22 H 0.068 0.932 23 H 0.094 0.906 24 H 0.341 0.659 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.267 0.733 28 H 0.047 0.953 29 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.653 -3.830 10.679 14.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.169 4.169 3 C -0.114 4.114 4 H 0.088 0.912 5 C -0.058 4.058 6 N -0.317 5.317 7 C -0.069 4.069 8 C -0.038 4.038 9 H 0.040 0.960 10 C -0.560 4.560 11 H 0.048 0.952 12 C -0.186 4.186 13 N -0.590 5.590 14 Si 0.780 3.220 15 H -0.191 1.191 16 H -0.225 1.225 17 H -0.171 1.171 18 C -0.122 4.122 19 H 0.132 0.868 20 H 0.115 0.885 21 H 0.131 0.869 22 H 0.087 0.913 23 H 0.113 0.887 24 H 0.158 0.842 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.016 -3.968 11.045 14.799 hybrid contribution -0.085 0.787 -1.073 1.333 sum -9.101 -3.181 9.972 13.870 Atomic orbital electron populations 1.23977 0.95454 1.02550 1.00643 1.22879 0.96280 0.97517 1.00222 1.21131 0.97293 0.96581 0.96421 0.91189 1.22048 0.95298 0.92104 0.96331 1.60793 1.24080 1.05409 1.41378 1.22271 0.95665 1.00324 0.88652 1.19757 0.94761 0.95389 0.93848 0.96027 1.21316 1.21404 1.05117 1.08116 0.95177 1.25931 0.94500 1.00884 0.97276 1.70049 1.25950 1.32113 1.30882 0.85779 0.80107 0.77560 0.78514 1.19127 1.22545 1.17086 1.21375 0.96975 0.97280 0.96609 0.86812 0.88534 0.86908 0.91327 0.88734 0.84213 0.93521 0.92130 0.92454 0.93461 0.93962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.06 14.32 67.78 0.97 -3.09 15 2 C -0.15 -3.79 8.78 25.64 0.23 -3.56 15 3 C -0.09 -2.84 2.63 -11.49 -0.03 -2.87 15 4 H 0.07 2.08 7.79 -2.39 -0.02 2.06 15 5 C 0.07 2.07 5.82 86.33 0.50 2.57 15 6 N -0.69 -23.34 6.87 -514.02 -3.53 -26.87 15 7 C 0.06 2.54 5.31 86.32 0.46 3.00 15 8 C -0.02 -0.79 1.84 -11.49 -0.02 -0.82 15 9 H 0.02 1.02 7.21 -2.39 -0.02 1.00 15 10 C -0.52 -30.15 9.15 25.60 0.23 -29.91 15 11 H 0.03 1.93 7.99 -2.91 -0.02 1.91 15 12 C 0.01 0.66 5.45 84.65 0.46 1.12 15 13 N -0.95 -60.07 13.96 21.45 0.30 -59.77 15 14 Si 0.95 45.28 24.37 68.60 1.67 46.95 15 15 H -0.27 -12.08 6.88 99.48 0.68 -11.40 15 16 H -0.30 -14.09 7.11 99.48 0.71 -13.38 15 17 H -0.25 -10.76 6.53 99.48 0.65 -10.11 15 18 C -0.08 -3.35 4.49 30.68 0.14 -3.22 15 19 H 0.11 1.97 8.06 -2.91 -0.02 1.94 15 20 H 0.10 2.00 7.83 -2.91 -0.02 1.98 15 21 H 0.11 2.67 8.06 -2.91 -0.02 2.65 15 22 H 0.07 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.09 2.22 8.14 -2.38 -0.02 2.20 15 24 H 0.34 10.65 8.86 -89.70 -0.79 9.85 15 25 H 0.05 2.08 3.29 -2.39 -0.01 2.07 15 26 H 0.06 2.67 8.14 -2.39 -0.02 2.65 15 27 H 0.27 15.75 8.31 -92.71 -0.77 14.98 15 28 H 0.05 1.93 8.14 -2.39 -0.02 1.91 15 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 15 Total: -1.00 -64.08 231.58 1.62 -62.46 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.24 Total: 14.01 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 2.94 Total: -36.78 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -3.23 Total: -86.65 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.67 Total: 46.95 kcal Total: -64.08 1.62 -62.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238122262.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.760 kcal (2) G-P(sol) polarization free energy of solvation -64.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds