Wall clock time and date at job start Mon Mar 30 2020 02:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30975 * 1 3 3 Si 1.86799 * 120.00435 * 2 1 4 4 H 1.48501 * 109.46649 * 89.99838 * 3 2 1 5 5 H 1.48488 * 109.47288 * 210.00083 * 3 2 1 6 6 H 1.48499 * 109.46890 * 330.00511 * 3 2 1 7 7 C 1.39852 * 119.99609 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00076 * 17.46708 * 7 2 1 9 9 C 1.40988 * 119.99786 * 197.46034 * 7 2 1 10 10 C 1.39354 * 121.05576 * 27.92782 * 9 7 2 11 11 N 1.35999 * 119.13050 * 180.02562 * 10 9 7 12 12 H 0.96994 * 119.22766 * 180.02562 * 11 10 9 13 13 C 1.34182 * 121.54400 * 0.02562 * 11 10 9 14 14 O 1.21576 * 118.80413 * 179.97438 * 13 11 10 15 15 N 1.34340 * 122.38948 * 359.97438 * 13 11 10 16 16 H 0.96997 * 119.69908 * 179.97438 * 15 13 11 17 17 C 1.34968 * 120.59701 * 359.69362 * 15 13 11 18 18 O 1.21629 * 120.77239 * 180.28271 * 17 15 13 19 19 H 0.96999 * 120.00024 * 175.44180 * 1 2 3 20 20 H 1.08005 * 120.43888 * 359.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3097 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 2.4913 2.0462 1.4001 5 1 3.5413 1.4401 -0.7000 6 1 1.4413 2.6526 -0.6999 7 6 2.0089 -1.2112 -0.0005 8 1 1.5062 -2.1248 -0.2817 9 6 3.3701 -1.2395 0.3658 10 6 3.8978 -0.2955 1.2446 11 7 5.2166 -0.3592 1.5709 12 1 5.5853 0.2969 2.1828 13 6 6.0195 -1.3084 1.0662 14 8 7.1909 -1.3185 1.3914 15 7 5.5761 -2.2481 0.2147 16 1 6.1910 -2.9160 -0.1267 17 6 4.2814 -2.2746 -0.1656 18 8 3.8753 -3.1269 -0.9324 19 1 -0.4850 -0.8374 -0.0668 20 1 3.2681 0.4771 1.6606 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238619028.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:32 Heat of formation + Delta-G solvation = -84.357706 kcal Electronic energy + Delta-G solvation = -10735.971036 eV Core-core repulsion = 8510.720613 eV Total energy + Delta-G solvation = -2225.250423 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.62469 -39.74438 -37.55240 -35.80643 -35.22586 -32.18640 -26.57035 -25.41606 -24.17388 -21.19516 -19.46127 -19.21637 -17.98222 -17.61178 -17.36319 -16.11753 -15.40382 -15.30390 -15.05133 -14.65132 -13.71272 -12.99174 -12.58290 -11.94491 -11.80154 -11.41845 -11.39554 -11.32898 -10.87559 -9.66894 -9.22157 -6.45478 0.35981 1.07064 1.41408 1.55969 1.63796 1.82152 2.22479 2.45123 2.55169 3.12202 3.71580 4.51395 4.80491 5.01592 5.30359 5.49584 5.89851 6.03909 6.18431 6.52118 6.63148 6.72249 7.27059 8.01519 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.051447 B = 0.018226 C = 0.014321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.121432 B = 1535.861411 C = 1954.735712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.004 3.996 3 Si 1.102 2.898 4 H -0.232 1.232 5 H -0.260 1.260 6 H -0.285 1.285 7 C -0.499 4.499 8 H 0.043 0.957 9 C -0.066 4.066 10 C -0.099 4.099 11 N -0.590 5.590 12 H 0.439 0.561 13 C 0.681 3.319 14 O -0.607 6.607 15 N -0.648 5.648 16 H 0.428 0.572 17 C 0.537 3.463 18 O -0.558 6.558 19 H 0.277 0.723 20 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.666 4.237 3.264 8.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.208 4.208 3 Si 0.921 3.079 4 H -0.157 1.157 5 H -0.184 1.184 6 H -0.212 1.212 7 C -0.531 4.531 8 H 0.061 0.939 9 C -0.074 4.074 10 C -0.219 4.219 11 N -0.235 5.235 12 H 0.280 0.720 13 C 0.382 3.618 14 O -0.488 6.488 15 N -0.315 5.315 16 H 0.269 0.731 17 C 0.332 3.668 18 O -0.436 6.436 19 H 0.088 0.912 20 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.592 5.356 3.044 9.023 hybrid contribution -0.065 -2.354 -0.319 2.376 sum 6.527 3.002 2.725 7.684 Atomic orbital electron populations 1.70655 1.08456 1.32422 1.34822 1.28521 0.95820 1.06515 0.89973 0.83286 0.74649 0.69777 0.80210 1.15678 1.18421 1.21238 1.19979 0.94118 0.96480 1.42478 0.93884 1.19253 0.93990 0.94892 0.99310 1.21886 0.84950 1.08410 1.06626 1.41474 1.08188 1.29000 1.44834 0.71967 1.15619 0.84818 0.80892 0.80449 1.90973 1.15754 1.77070 1.65009 1.44341 1.12247 1.31072 1.43878 0.73051 1.19876 0.81717 0.85439 0.79805 1.90708 1.76730 1.39681 1.36453 0.91250 0.81004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.00 13.66 21.82 0.30 -43.70 14 2 C 0.00 0.20 5.43 85.21 0.46 0.67 14 3 Si 1.10 41.59 24.91 68.60 1.71 43.29 14 4 H -0.23 -7.13 6.45 99.48 0.64 -6.49 14 5 H -0.26 -9.53 6.99 99.48 0.70 -8.84 14 6 H -0.29 -10.79 7.11 99.48 0.71 -10.08 14 7 C -0.50 -26.46 9.21 23.33 0.21 -26.25 14 8 H 0.04 2.57 8.01 -2.91 -0.02 2.54 14 9 C -0.07 -3.06 5.33 -19.81 -0.11 -3.17 14 10 C -0.10 -3.75 8.62 84.32 0.73 -3.02 14 11 N -0.59 -19.27 5.21 -322.35 -1.68 -20.95 14 12 H 0.44 10.85 8.85 -92.71 -0.82 10.03 14 13 C 0.68 24.83 8.57 179.38 1.54 26.37 14 14 O -0.61 -23.59 17.93 -3.96 -0.07 -23.66 14 15 N -0.65 -24.40 5.21 -443.82 -2.31 -26.71 14 16 H 0.43 13.94 8.87 -92.71 -0.82 13.12 14 17 C 0.54 24.60 7.96 86.74 0.69 25.29 14 18 O -0.56 -28.92 17.53 -4.12 -0.07 -28.99 14 19 H 0.28 14.69 8.73 -92.71 -0.81 13.88 14 20 H 0.17 5.96 4.34 -2.91 -0.01 5.95 14 Total: -1.00 -61.68 188.92 0.96 -60.73 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -0.44 Total: 20.11 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 3.53 Total: 19.88 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -3.69 Total: -91.37 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: -0.14 Total: -52.65 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.71 Total: 43.29 kcal Total: -61.68 0.96 -60.73 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238619028.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.632 kcal (2) G-P(sol) polarization free energy of solvation -61.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds