Wall clock time and date at job start Mon Mar 30 2020 02:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86801 * 119.99587 * 2 1 4 4 H 1.48499 * 109.47360 * 274.69471 * 3 2 1 5 5 H 1.48499 * 109.47211 * 34.69327 * 3 2 1 6 6 H 1.48501 * 109.47387 * 154.69264 * 3 2 1 7 7 C 1.39927 * 120.00471 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00211 * 197.85023 * 7 2 1 9 9 C 1.41404 * 119.99593 * 17.85165 * 7 2 1 10 10 C 1.40659 * 120.20262 * 204.42641 * 9 7 2 11 11 C 1.38113 * 119.74278 * 180.02562 * 10 9 7 12 12 O 1.35899 * 119.91521 * 179.97438 * 11 10 9 13 13 C 1.39107 * 120.16476 * 359.96422 * 11 10 9 14 14 C 1.38749 * 120.41740 * 359.97438 * 13 11 10 15 15 F 1.35103 * 119.87518 * 180.02562 * 14 13 11 16 16 C 1.37904 * 120.25325 * 0.02562 * 14 13 11 17 17 H 0.96993 * 120.00315 * 359.97438 * 1 2 3 18 18 H 1.08001 * 120.12838 * 0.04954 * 10 9 7 19 19 H 0.96705 * 113.99968 * 269.97778 * 12 11 10 20 20 H 1.07994 * 119.79289 * 180.02562 * 13 11 10 21 21 H 1.08000 * 120.07807 * 179.72615 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3904 2.1038 -1.3953 5 1 1.4927 2.6220 0.7969 6 1 3.5859 1.4138 0.5985 7 6 2.0080 -1.2117 0.0005 8 1 3.0490 -1.2341 0.2872 9 6 1.3521 -2.4070 -0.3743 10 6 1.8259 -3.6487 0.0865 11 6 1.1782 -4.8103 -0.2860 12 8 1.6333 -6.0118 0.1567 13 6 0.0612 -4.7533 -1.1131 14 6 -0.4127 -3.5322 -1.5705 15 9 -1.4988 -3.4896 -2.3729 16 6 0.2207 -2.3617 -1.2093 17 1 -0.4850 0.8400 0.0004 18 1 2.6925 -3.6935 0.7294 19 1 2.2871 -6.4234 -0.4249 20 1 -0.4409 -5.6653 -1.4003 21 1 -0.1479 -1.4130 -1.5706 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238697996.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:57 Heat of formation + Delta-G solvation = -101.561267 kcal Electronic energy + Delta-G solvation = -10370.132817 eV Core-core repulsion = 8124.216430 eV Total energy + Delta-G solvation = -2245.916387 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.65280 -39.96710 -37.55279 -35.21577 -31.67315 -30.01105 -27.47067 -23.22303 -22.86799 -20.05683 -18.31810 -17.38995 -17.04555 -16.68980 -16.51158 -16.24367 -15.26785 -14.69983 -14.36932 -13.48934 -13.29332 -12.89283 -12.50579 -12.20100 -12.07956 -11.90162 -11.36803 -11.08010 -9.54911 -9.24294 -8.76663 -6.54490 0.67365 0.72014 1.39727 1.48436 1.55173 2.17414 2.51311 3.31029 3.47109 3.93095 4.42114 4.60468 4.81741 4.98242 5.18062 5.43012 5.63492 5.73092 5.84775 6.09130 6.44601 6.69207 6.75566 7.07779 8.20332 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.050517 B = 0.014034 C = 0.011329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.131563 B = 1994.652178 C = 2470.838251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.033 3.967 3 Si 0.993 3.007 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.252 1.252 7 C -0.482 4.482 8 H 0.092 0.908 9 C 0.113 3.887 10 C -0.268 4.268 11 C 0.158 3.842 12 O -0.508 6.508 13 C -0.308 4.308 14 C 0.111 3.889 15 F -0.161 7.161 16 C -0.233 4.233 17 H 0.294 0.706 18 H 0.116 0.884 19 H 0.405 0.595 20 H 0.127 0.873 21 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.525 -1.034 -1.528 3.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.184 4.184 3 Si 0.812 3.188 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.175 1.175 7 C -0.510 4.510 8 H 0.110 0.890 9 C 0.110 3.890 10 C -0.288 4.288 11 C 0.113 3.887 12 O -0.320 6.320 13 C -0.329 4.329 14 C 0.092 3.908 15 F -0.140 7.140 16 C -0.253 4.253 17 H 0.105 0.895 18 H 0.134 0.866 19 H 0.263 0.737 20 H 0.145 0.855 21 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.890 -0.795 -1.071 3.183 hybrid contribution 0.074 0.484 -0.507 0.705 sum 2.964 -0.311 -1.578 3.372 Atomic orbital electron populations 1.69872 1.09465 1.31377 1.33359 1.26968 0.95485 1.05200 0.90708 0.85030 0.79204 0.75012 0.79545 1.18567 1.19219 1.17503 1.19970 0.98966 0.91731 1.40286 0.88964 1.17551 0.90250 0.93239 0.87955 1.21419 1.05932 0.92055 1.09399 1.17832 0.92861 0.84735 0.93242 1.84669 1.63234 1.32371 1.51773 1.20679 1.05018 0.95985 1.11177 1.17588 0.85119 0.95053 0.93026 1.91340 1.53180 1.97577 1.71928 1.21272 1.02429 0.95926 1.05713 0.89515 0.86621 0.73662 0.85534 0.86710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.91 10.95 21.82 0.24 -41.67 14 2 C 0.03 1.61 5.14 85.25 0.44 2.05 14 3 Si 0.99 36.14 29.59 68.60 2.03 38.17 14 4 H -0.26 -9.24 7.11 99.48 0.71 -8.53 14 5 H -0.27 -9.32 7.11 99.48 0.71 -8.62 14 6 H -0.25 -8.77 7.11 99.48 0.71 -8.06 14 7 C -0.48 -24.85 9.05 23.46 0.21 -24.64 14 8 H 0.09 4.46 7.91 -2.91 -0.02 4.44 14 9 C 0.11 6.03 5.57 -21.31 -0.12 5.91 14 10 C -0.27 -12.97 9.73 22.83 0.22 -12.75 14 11 C 0.16 7.03 6.69 22.45 0.15 7.18 14 12 O -0.51 -18.55 13.49 -92.41 -1.25 -19.80 14 13 C -0.31 -14.15 9.97 22.60 0.23 -13.93 14 14 C 0.11 5.59 7.28 22.31 0.16 5.75 14 15 F -0.16 -7.72 17.26 44.97 0.78 -6.94 14 16 C -0.23 -12.58 8.66 22.79 0.20 -12.38 14 17 H 0.29 13.52 8.30 -92.71 -0.77 12.75 14 18 H 0.12 5.22 8.06 -2.91 -0.02 5.19 14 19 H 0.41 9.95 9.06 -74.05 -0.67 9.27 14 20 H 0.13 5.19 8.06 -2.91 -0.02 5.17 14 21 H 0.12 6.46 6.16 -2.91 -0.02 6.44 14 Total: -1.00 -58.87 202.25 3.88 -54.99 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.59 Total: 18.05 kcal Atomic # 6 Polarization: -44.28 SS G_CDS: 1.49 Total: -42.79 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.24 Total: -41.67 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -1.25 Total: -19.80 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 0.78 Total: -6.94 kcal Atomic # 14 Polarization: 36.14 SS G_CDS: 2.03 Total: 38.17 kcal Total: -58.87 3.88 -54.99 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238697996.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.573 kcal (2) G-P(sol) polarization free energy of solvation -58.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds