Wall clock time and date at job start Mon Mar 30 2020 02:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38422 * 122.53614 * 2 1 4 4 C 1.33390 * 114.91870 * 179.97438 * 3 2 1 5 5 S 1.75890 * 109.59395 * 359.97438 * 4 3 2 6 6 C 1.33383 * 122.53781 * 179.97438 * 2 1 3 7 7 C 1.50704 * 125.20741 * 0.06509 * 6 2 1 8 8 C 1.50691 * 109.47209 * 89.97490 * 7 6 2 9 9 H 1.08003 * 120.00133 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00273 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99776 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00297 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47209 * 59.99892 * 12 10 8 14 14 H 1.48498 * 109.46898 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46994 * 299.99910 * 12 10 8 16 16 H 1.08995 * 109.47031 * 270.02672 * 1 2 3 17 17 H 1.09001 * 109.46930 * 30.02429 * 1 2 3 18 18 H 1.08996 * 109.46768 * 150.02516 * 1 2 3 19 19 H 1.07999 * 122.54698 * 359.95314 * 3 2 1 20 20 H 1.07998 * 125.20728 * 180.02562 * 4 3 2 21 21 H 1.09001 * 109.46886 * 209.98166 * 7 6 2 22 22 H 1.08999 * 109.46454 * 329.97614 * 7 6 2 23 23 H 0.96996 * 120.00567 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9901 0.0005 5 16 3.9387 -0.7305 0.0018 6 6 2.2245 -1.1245 0.0005 7 6 1.6537 -2.5192 -0.0003 8 6 1.4643 -2.9837 -1.4213 9 1 1.7309 -2.3340 -2.2418 10 6 0.9505 -4.2380 -1.6739 11 7 0.6254 -5.0289 -0.6748 12 14 0.7163 -4.8140 -3.4354 13 1 2.0267 -4.8156 -4.1340 14 1 0.1527 -6.1878 -3.4361 15 1 -0.2172 -3.8961 -4.1363 16 1 -0.3633 0.0005 1.0276 17 1 -0.3633 0.8898 -0.5142 18 1 -0.3633 -0.8902 -0.5134 19 1 1.7965 2.1464 -0.0007 20 1 4.3078 1.7822 0.0010 21 1 2.3395 -3.1927 0.5138 22 1 0.6922 -2.5185 0.5130 23 1 0.2636 -5.9112 -0.8524 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259272002.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:29 Heat of formation + Delta-G solvation = -4.270895 kcal Electronic energy + Delta-G solvation = -8714.609004 eV Core-core repulsion = 7039.124621 eV Total energy + Delta-G solvation = -1675.484384 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 182.046 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.17293 -35.36669 -32.62271 -30.42295 -27.46142 -24.79445 -23.07195 -18.99037 -18.55485 -17.89157 -16.49142 -15.86552 -14.90858 -14.51528 -14.22767 -13.77176 -13.32573 -12.91935 -12.78691 -12.64363 -12.47507 -12.22191 -11.78479 -11.59699 -11.42872 -10.61017 -9.29880 -9.10953 -8.21369 -6.35564 0.32064 0.92017 1.32456 1.39364 1.41964 1.50241 1.97227 2.40427 3.09133 4.22340 4.33283 4.59248 4.75561 4.90704 4.91832 5.14231 5.21317 5.30683 5.39628 5.68516 5.82408 5.89700 6.12899 6.74502 7.32848 8.87136 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.054867 B = 0.012592 C = 0.011799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.200712 B = 2223.138930 C = 2372.580243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.146 4.146 3 C -0.127 4.127 4 C -0.223 4.223 5 S 0.047 5.953 6 C -0.155 4.155 7 C 0.091 3.909 8 C -0.528 4.528 9 H 0.052 0.948 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.965 3.035 13 H -0.269 1.269 14 H -0.279 1.279 15 H -0.266 1.266 16 H 0.069 0.931 17 H 0.083 0.917 18 H 0.046 0.954 19 H 0.166 0.834 20 H 0.193 0.807 21 H -0.002 1.002 22 H 0.019 0.981 23 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.633 10.536 0.149 10.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.157 4.157 3 C -0.157 4.157 4 C -0.357 4.357 5 S 0.310 5.690 6 C -0.272 4.272 7 C 0.052 3.948 8 C -0.566 4.566 9 H 0.071 0.929 10 C -0.190 4.190 11 N -0.568 5.568 12 Si 0.789 3.211 13 H -0.194 1.194 14 H -0.204 1.204 15 H -0.191 1.191 16 H 0.087 0.913 17 H 0.102 0.898 18 H 0.065 0.935 19 H 0.184 0.816 20 H 0.210 0.790 21 H 0.016 0.984 22 H 0.038 0.962 23 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.932 9.536 0.200 10.316 hybrid contribution -1.359 -0.006 -0.631 1.498 sum 2.573 9.529 -0.431 9.880 Atomic orbital electron populations 1.20415 0.89471 1.02441 1.01984 1.19181 0.98344 0.91859 1.06278 1.20251 0.92959 0.99249 1.03230 1.25763 1.00168 0.97825 1.11958 1.84055 1.07439 1.02709 1.74768 1.24864 0.95593 1.00410 1.06360 1.17567 0.94482 0.86032 0.96671 1.21276 1.42878 1.00371 0.92070 0.92948 1.25886 0.94784 0.96541 1.01798 1.70060 1.44019 1.09603 1.33115 0.85502 0.78842 0.77481 0.79287 1.19447 1.20424 1.19112 0.91262 0.89789 0.93523 0.81630 0.78976 0.98359 0.96250 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.98 9.60 71.24 0.68 -2.29 14 2 C -0.15 -5.70 5.80 -20.92 -0.12 -5.82 14 3 C -0.13 -3.96 9.98 21.22 0.21 -3.75 14 4 C -0.22 -6.70 11.23 66.72 0.75 -5.95 14 5 S 0.05 1.79 23.33 -56.49 -1.32 0.47 14 6 C -0.16 -7.08 5.69 24.59 0.14 -6.94 14 7 C 0.09 4.98 4.84 29.10 0.14 5.12 14 8 C -0.53 -30.46 9.09 25.60 0.23 -30.23 14 9 H 0.05 3.00 7.74 -2.91 -0.02 2.98 14 10 C 0.01 0.49 5.46 84.65 0.46 0.95 14 11 N -0.93 -55.94 13.29 21.45 0.28 -55.65 14 12 Si 0.96 44.43 29.54 68.60 2.03 46.45 14 13 H -0.27 -12.06 7.11 99.48 0.71 -11.36 14 14 H -0.28 -12.43 7.11 99.48 0.71 -11.73 14 15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 14 16 H 0.07 2.24 8.14 -2.39 -0.02 2.22 14 17 H 0.08 2.39 8.13 -2.39 -0.02 2.37 14 18 H 0.05 1.95 7.25 -2.39 -0.02 1.93 14 19 H 0.17 3.90 8.06 -2.91 -0.02 3.88 14 20 H 0.19 4.17 8.06 -2.91 -0.02 4.15 14 21 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 14 22 H 0.02 1.11 7.32 -2.39 -0.02 1.09 14 23 H 0.27 15.07 8.31 -92.71 -0.77 14.30 14 Total: -1.00 -63.69 220.30 4.68 -59.01 By element: Atomic # 1 Polarization: -2.56 SS G_CDS: 1.19 Total: -1.37 kcal Atomic # 6 Polarization: -51.42 SS G_CDS: 2.50 Total: -48.92 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.28 Total: -55.65 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.32 Total: 0.47 kcal Total: -63.69 4.68 -59.01 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259272002.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.743 kcal (2) G-P(sol) polarization free energy of solvation -63.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds