Wall clock time and date at job start Mon Mar 30 2020 02:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86798 * 120.00271 * 2 1 4 4 H 1.48502 * 109.47304 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47204 * 300.00713 * 3 2 1 6 6 H 1.48503 * 109.46721 * 60.00161 * 3 2 1 7 7 C 1.40102 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00129 * 180.02562 * 7 2 1 9 9 C 1.41538 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.40950 * 120.61489 * 180.02562 * 9 7 2 11 11 C 1.38358 * 118.32164 * 180.02562 * 10 9 7 12 12 N 1.32337 * 119.35366 * 359.97438 * 11 10 9 13 13 C 1.32786 * 121.21714 * 359.97438 * 12 11 10 14 14 S 1.76195 * 119.08242 * 179.97438 * 13 12 11 15 15 N 1.32171 * 121.84050 * 0.28198 * 13 12 11 16 16 H 0.96994 * 120.00175 * 359.97438 * 1 2 3 17 17 H 1.08005 * 120.83888 * 359.97438 * 10 9 7 18 18 H 1.08001 * 120.31719 * 180.02562 * 11 10 9 19 19 H 1.41005 * 99.99931 * 90.00149 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8820 2.3965 -1.2124 6 1 1.8821 2.3963 1.2126 7 6 2.0073 -1.2133 -0.0005 8 1 3.0873 -1.2133 -0.0001 9 6 1.2996 -2.4391 -0.0005 10 6 1.9912 -3.6672 -0.0005 11 6 1.2520 -4.8368 -0.0011 12 7 -0.0697 -4.7689 -0.0011 13 6 -0.6987 -3.5995 0.0000 14 16 -2.4605 -3.5747 -0.0008 15 7 -0.0402 -2.4535 -0.0045 16 1 -0.4850 0.8400 0.0004 17 1 3.0709 -3.6946 -0.0010 18 1 1.7488 -5.7957 -0.0007 19 1 -2.7059 -3.5728 1.3878 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259599883.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:48 Heat of formation + Delta-G solvation = 40.395973 kcal Electronic energy + Delta-G solvation = -8618.612053 eV Core-core repulsion = 6841.524227 eV Total energy + Delta-G solvation = -1777.087826 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 182.021 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.81729 -34.14983 -31.47815 -30.59170 -26.50527 -22.88232 -22.08041 -18.20315 -16.89025 -15.76665 -14.97942 -14.56650 -13.91879 -13.26557 -12.80818 -12.42440 -11.45169 -11.25529 -10.95481 -10.53564 -10.32358 -9.88781 -9.10102 -8.76213 -8.19702 -7.64940 -7.32376 -6.60444 -4.90101 2.02891 2.53816 2.74142 2.99022 3.03695 3.08576 3.38483 3.79291 4.59462 5.63405 5.67472 6.28189 6.47853 6.56257 6.94322 7.02098 7.56199 7.87739 8.30649 8.57604 8.81343 9.78129 10.07238 Molecular weight = 182.02amu Principal moments of inertia in cm(-1) A = 0.054322 B = 0.015068 C = 0.011876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.323524 B = 1857.841388 C = 2357.034090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.064 3.936 3 Si 0.914 3.086 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.412 4.412 8 H 0.092 0.908 9 C 0.257 3.743 10 C -0.309 4.309 11 C 0.129 3.871 12 N -0.591 5.591 13 C 0.298 3.702 14 S -0.089 6.089 15 N -0.470 5.470 16 H 0.280 0.720 17 H 0.112 0.888 18 H 0.134 0.866 19 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.018 0.150 0.633 1.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.320 5.320 2 C -0.164 4.164 3 Si 0.737 3.263 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.446 4.446 8 H 0.110 0.890 9 C 0.126 3.874 10 C -0.336 4.336 11 C -0.032 4.032 12 N -0.316 5.316 13 C -0.084 4.084 14 S 0.064 5.936 15 N -0.192 5.192 16 H 0.091 0.909 17 H 0.130 0.870 18 H 0.151 0.849 19 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.064 0.324 0.385 1.177 hybrid contribution 2.326 0.667 0.947 2.598 sum 1.262 0.991 1.333 2.086 Atomic orbital electron populations 1.70082 1.07301 1.28648 1.25986 1.26197 0.95056 1.01562 0.93555 0.86156 0.80759 0.80499 0.78843 1.18180 1.19478 1.19608 1.19767 0.94588 0.88927 1.41332 0.89001 1.18911 0.87994 0.92472 0.88005 1.22512 1.00141 0.94918 1.16060 1.22393 0.89925 0.97099 0.93793 1.68602 1.10038 1.28499 1.24512 1.23551 0.97233 0.87803 0.99782 1.86068 0.98262 1.98019 1.11237 1.69929 1.08298 1.25028 1.15957 0.90898 0.86983 0.84865 0.94689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.14 11.52 55.55 0.64 -17.50 13 2 C 0.06 1.57 5.50 -17.34 -0.10 1.48 13 3 Si 0.91 17.70 29.56 -169.99 -5.02 12.67 13 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 13 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 13 6 H -0.27 -5.17 7.11 56.52 0.40 -4.77 13 7 C -0.41 -10.63 9.19 -37.63 -0.35 -10.98 13 8 H 0.09 2.17 7.85 -52.48 -0.41 1.76 13 9 C 0.26 6.98 6.58 -84.64 -0.56 6.43 13 10 C -0.31 -7.44 9.94 -38.51 -0.38 -7.82 13 11 C 0.13 2.98 11.29 -17.29 -0.20 2.78 13 12 N -0.59 -14.85 10.38 -13.53 -0.14 -14.99 13 13 C 0.30 7.80 7.91 -90.97 -0.72 7.08 13 14 S -0.09 -1.95 26.15 -107.50 -2.81 -4.76 13 15 N -0.47 -13.19 8.00 -11.38 -0.09 -13.29 13 16 H 0.28 6.50 8.29 -40.82 -0.34 6.16 13 17 H 0.11 2.38 8.06 -52.48 -0.42 1.96 13 18 H 0.13 2.51 8.06 -52.49 -0.42 2.08 13 19 H 0.09 1.77 9.55 96.90 0.93 2.70 13 LS Contribution 199.14 15.07 3.00 3.00 Total: -1.00 -29.06 199.14 -6.19 -35.24 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: 0.53 Total: 0.66 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.30 Total: -1.03 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.41 Total: -45.78 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.02 Total: 12.67 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -2.81 Total: -4.76 kcal Total LS contribution 3.00 Total: 3.00 kcal Total: -29.06 -6.19 -35.24 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259599883.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.639 kcal (2) G-P(sol) polarization free energy of solvation -29.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds