Wall clock time and date at job start Mon Mar 30 2020 02:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31305 * 1 3 3 Si 1.86798 * 120.00426 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00598 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00157 * 3 2 1 7 7 C 1.39145 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99414 * 179.97438 * 7 2 1 9 9 N 1.36698 * 119.99980 * 359.72124 * 7 2 1 10 10 C 1.34774 * 119.99952 * 180.02562 * 9 7 2 11 11 O 1.21667 * 119.99979 * 0.02562 * 10 9 7 12 12 C 1.47233 * 120.00278 * 179.97438 * 10 9 7 13 13 N 1.31406 * 125.71862 * 359.69225 * 12 10 9 14 14 C 1.33457 * 108.70265 * 179.83726 * 13 12 10 15 15 C 1.35239 * 107.85497 * 0.42536 * 14 13 12 16 16 O 1.34360 * 107.22952 * 359.74028 * 15 14 13 17 17 H 0.97000 * 120.00131 * 359.97438 * 1 2 3 18 18 H 0.96995 * 119.99705 * 359.97438 * 9 7 2 19 19 H 1.08002 * 126.07227 * 180.14912 * 14 13 12 20 20 H 1.07994 * 126.38678 * 179.72465 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3131 0.0000 0.0000 3 14 2.2472 1.6176 0.0000 4 1 3.7071 1.3463 -0.0006 5 1 1.8884 2.3964 -1.2124 6 1 1.8884 2.3963 1.2126 7 6 2.0087 -1.2051 -0.0005 8 1 3.0887 -1.2050 -0.0010 9 7 1.3252 -2.3889 0.0047 10 6 1.9990 -3.5561 0.0047 11 8 3.2156 -3.5561 0.0005 12 6 1.2628 -4.8311 0.0109 13 7 -0.0446 -4.9621 0.0225 14 6 -0.3445 -6.2625 0.0212 15 6 0.8166 -6.9558 0.0180 16 8 1.8162 -6.0580 0.0115 17 1 -0.4850 0.8400 0.0004 18 1 0.3552 -2.3888 0.0092 19 1 -1.3380 -6.6860 0.0267 20 1 0.9210 -8.0307 0.0205 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259736223.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:08 Heat of formation + Delta-G solvation = -38.036925 kcal Electronic energy + Delta-G solvation = -10353.310407 eV Core-core repulsion = 8130.068604 eV Total energy + Delta-G solvation = -2223.241803 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -44.31571 -40.07735 -36.40046 -35.78161 -33.53682 -31.26388 -27.55964 -24.86095 -23.44414 -21.66287 -20.34043 -18.86656 -17.77275 -17.55279 -16.80388 -16.13992 -15.52964 -15.36044 -14.82277 -14.08441 -13.66601 -13.00447 -12.57625 -12.51813 -12.08552 -11.73198 -11.71288 -11.00662 -10.30275 -9.94338 -8.66140 -6.12900 -0.03601 1.31454 1.36564 1.49481 1.53239 1.64195 2.22694 2.29029 2.95529 3.10577 3.59544 4.01483 4.15212 4.77189 4.87461 5.23032 5.26261 5.72745 6.25152 6.61233 6.86155 7.22005 7.74258 8.50402 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.092365 B = 0.010596 C = 0.009537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.070798 B = 2641.854014 C = 2935.076945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.003 4.003 3 Si 1.012 2.988 4 H -0.266 1.266 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.341 4.341 8 H 0.097 0.903 9 N -0.509 5.509 10 C 0.494 3.506 11 O -0.624 6.624 12 C 0.139 3.861 13 N -0.475 5.475 14 C -0.057 4.057 15 C -0.050 4.050 16 O -0.193 6.193 17 H 0.289 0.711 18 H 0.406 0.594 19 H 0.230 0.770 20 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 -8.027 0.043 8.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.207 4.207 3 Si 0.833 3.167 4 H -0.190 1.190 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.471 4.471 8 H 0.114 0.886 9 N -0.143 5.143 10 C 0.280 3.720 11 O -0.513 6.513 12 C -0.065 4.065 13 N -0.210 5.210 14 C -0.199 4.199 15 C -0.121 4.121 16 O -0.076 6.076 17 H 0.099 0.901 18 H 0.241 0.759 19 H 0.246 0.754 20 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -2.622 -7.340 0.047 7.795 hybrid contribution 0.109 -0.072 0.003 0.131 sum -2.513 -7.412 0.051 7.827 Atomic orbital electron populations 1.69673 1.07504 1.30711 1.45456 1.26470 0.96644 1.03233 0.94383 0.84615 0.78119 0.75163 0.78844 1.19014 1.18898 1.18891 1.20036 0.93609 0.82674 1.50759 0.88554 1.41559 1.10200 1.03676 1.58843 1.15973 0.85939 0.81292 0.88795 1.90637 1.13818 1.86585 1.60235 1.25371 0.87602 0.86573 1.06959 1.70484 1.11378 1.22804 1.16354 1.24225 1.02559 0.87069 1.06061 1.26646 0.84614 0.97686 1.03188 1.84519 1.39213 1.15959 1.67896 0.90084 0.75859 0.75405 0.70689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.78 13.04 21.70 0.28 -47.49 14 2 C 0.00 -0.18 5.50 84.99 0.47 0.29 14 3 Si 1.01 41.00 29.55 68.60 2.03 43.03 14 4 H -0.27 -10.82 7.11 99.48 0.71 -10.11 14 5 H -0.26 -10.13 7.11 99.48 0.71 -9.42 14 6 H -0.26 -10.12 7.11 99.48 0.71 -9.42 14 7 C -0.34 -19.58 9.68 84.15 0.81 -18.76 14 8 H 0.10 5.74 7.15 -2.91 -0.02 5.72 14 9 N -0.51 -28.46 5.27 -310.18 -1.63 -30.09 14 10 C 0.49 27.24 7.76 86.61 0.67 27.91 14 11 O -0.62 -38.13 16.68 1.11 0.02 -38.11 14 12 C 0.14 6.40 8.08 87.12 0.70 7.11 14 13 N -0.48 -19.34 10.91 -305.22 -3.33 -22.67 14 14 C -0.06 -1.59 11.88 83.75 0.99 -0.60 14 15 C -0.05 -1.25 12.19 67.13 0.82 -0.43 14 16 O -0.19 -7.55 10.79 -0.47 -0.01 -7.56 14 17 H 0.29 14.03 8.31 -92.71 -0.77 13.26 14 18 H 0.41 22.26 7.56 -92.71 -0.70 21.56 14 19 H 0.23 3.99 8.06 -2.91 -0.02 3.97 14 20 H 0.28 3.01 8.06 -2.91 -0.02 2.99 14 Total: -1.00 -71.25 201.79 2.41 -68.84 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.58 Total: 18.54 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 4.47 Total: 15.51 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -4.68 Total: -100.25 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: 0.01 Total: -45.67 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -71.25 2.41 -68.84 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259736223.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.804 kcal (2) G-P(sol) polarization free energy of solvation -71.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds