Wall clock time and date at job start Mon Mar 30 2020 02:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30947 * 1 3 3 Si 1.86801 * 119.99944 * 2 1 4 4 H 1.48507 * 109.47052 * 273.03229 * 3 2 1 5 5 H 1.48499 * 109.47070 * 33.02959 * 3 2 1 6 6 H 1.48497 * 109.47216 * 153.03390 * 3 2 1 7 7 C 1.39846 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99507 * 170.54682 * 7 2 1 9 9 C 1.41029 * 119.99900 * 350.82184 * 7 2 1 10 10 C 1.38746 * 127.42403 * 349.41291 * 9 7 2 11 11 O 1.33876 * 108.35327 * 179.86888 * 10 9 7 12 12 C 1.33685 * 111.48290 * 0.41252 * 11 10 9 13 13 C 1.36155 * 109.38643 * 359.74658 * 12 11 10 14 14 C 1.46940 * 127.18919 * 179.97438 * 13 12 11 15 15 O 1.21574 * 119.99991 * 180.02562 * 14 13 12 16 16 O 1.34817 * 119.99956 * 359.97438 * 14 13 12 17 17 H 0.96996 * 120.00171 * 359.97438 * 1 2 3 18 18 H 1.08003 * 125.82469 * 0.02562 * 10 9 7 19 19 H 1.08001 * 125.30586 * 179.77427 * 12 11 10 20 20 H 0.96697 * 117.00183 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2435 1.6178 0.0000 4 1 2.4268 2.0835 -1.3982 5 1 1.4744 2.6333 0.7631 6 1 3.5716 1.4226 0.6349 7 6 2.0087 -1.2111 -0.0005 8 1 3.0777 -1.2172 -0.1542 9 6 1.3172 -2.4247 0.1937 10 6 -0.0004 -2.5893 0.5964 11 8 -0.2628 -3.9008 0.6541 12 6 0.8075 -4.6294 0.3213 13 6 1.8430 -3.7990 0.0179 14 6 3.1988 -4.1848 -0.3966 15 8 4.0278 -3.3286 -0.6368 16 8 3.5238 -5.4883 -0.5097 17 1 -0.4850 0.8400 0.0004 18 1 -0.6963 -1.7948 0.8220 19 1 0.8448 -5.7085 0.2965 20 1 4.4278 -5.6931 -0.7851 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259828907.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:18 Heat of formation + Delta-G solvation = -116.909818 kcal Electronic energy + Delta-G solvation = -10525.238141 eV Core-core repulsion = 8266.283402 eV Total energy + Delta-G solvation = -2258.954739 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.57170 -40.57530 -36.84197 -35.87855 -33.13913 -30.38563 -27.41490 -25.13974 -22.09864 -21.15557 -19.26408 -18.69118 -17.78282 -16.72829 -16.59002 -16.08482 -15.93398 -14.98226 -14.37956 -13.76010 -13.59579 -13.06994 -12.75654 -12.45426 -11.93924 -11.85265 -11.41046 -11.37074 -10.23523 -9.16912 -8.66546 -6.37908 0.52534 1.26247 1.36807 1.51585 1.80117 2.22565 2.30904 2.34981 2.78819 3.31333 4.28303 4.35254 5.04412 5.16280 5.40909 5.56899 5.72413 5.90350 6.36976 6.59524 6.91429 7.01486 7.26111 8.37635 Molecular weight = 182.04amu Principal moments of inertia in cm(-1) A = 0.045958 B = 0.016097 C = 0.012048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.110227 B = 1739.051839 C = 2323.493743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.023 3.977 3 Si 0.990 3.010 4 H -0.265 1.265 5 H -0.257 1.257 6 H -0.268 1.268 7 C -0.462 4.462 8 H 0.069 0.931 9 C 0.015 3.985 10 C -0.209 4.209 11 O -0.178 6.178 12 C 0.045 3.955 13 C -0.324 4.324 14 C 0.559 3.441 15 O -0.562 6.562 16 O -0.505 6.505 17 H 0.290 0.710 18 H 0.207 0.793 19 H 0.247 0.753 20 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 -5.364 0.344 5.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.188 4.188 3 Si 0.811 3.189 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.193 1.193 7 C -0.492 4.492 8 H 0.087 0.913 9 C 0.012 3.988 10 C -0.276 4.276 11 O -0.073 6.073 12 C -0.027 4.027 13 C -0.328 4.328 14 C 0.407 3.593 15 O -0.456 6.456 16 O -0.319 6.319 17 H 0.101 0.899 18 H 0.223 0.777 19 H 0.263 0.737 20 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 1.126 -4.988 0.481 5.136 hybrid contribution 1.137 0.719 -0.347 1.389 sum 2.262 -4.269 0.134 4.833 Atomic orbital electron populations 1.69557 1.08385 1.30402 1.38509 1.26689 0.95828 1.04240 0.92082 0.85064 0.78650 0.75831 0.79324 1.18944 1.18117 1.19278 1.19197 0.95571 0.90586 1.43883 0.91252 1.19338 0.92709 0.91020 0.95719 1.24759 1.00010 0.79993 1.22797 1.83427 1.37136 1.19436 1.67299 1.24789 0.83346 0.97863 0.96736 1.20648 0.93823 0.95702 1.22582 1.19788 0.86905 0.79951 0.72612 1.90799 1.52058 1.52604 1.50131 1.84518 1.39831 1.25671 1.81892 0.89929 0.77711 0.73729 0.71348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.76 10.70 21.82 0.23 -44.53 14 2 C 0.02 1.22 5.45 85.21 0.46 1.69 14 3 Si 0.99 41.53 29.57 68.60 2.03 43.56 14 4 H -0.26 -10.72 7.11 99.48 0.71 -10.02 14 5 H -0.26 -9.84 7.11 99.48 0.71 -9.14 14 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 14 7 C -0.46 -27.35 9.04 23.34 0.21 -27.14 14 8 H 0.07 4.26 6.60 -2.91 -0.02 4.24 14 9 C 0.01 0.85 6.10 -19.83 -0.12 0.73 14 10 C -0.21 -11.22 11.06 67.94 0.75 -10.47 14 11 O -0.18 -8.22 10.47 7.38 0.08 -8.14 14 12 C 0.05 1.82 11.85 67.33 0.80 2.62 14 13 C -0.32 -15.80 6.32 -18.84 -0.12 -15.92 14 14 C 0.56 24.82 8.32 70.10 0.58 25.40 14 15 O -0.56 -28.99 16.21 19.60 0.32 -28.67 14 16 O -0.51 -15.60 13.28 -57.30 -0.76 -16.36 14 17 H 0.29 13.84 8.30 -92.71 -0.77 13.07 14 18 H 0.21 11.22 6.16 -2.91 -0.02 11.20 14 19 H 0.25 6.74 8.06 -2.91 -0.02 6.71 14 20 H 0.43 8.50 9.11 -74.06 -0.67 7.83 14 Total: -1.00 -69.14 197.91 5.08 -64.06 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.62 Total: 13.17 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 2.57 Total: -23.09 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.23 Total: -44.53 kcal Atomic # 8 Polarization: -52.80 SS G_CDS: -0.37 Total: -53.17 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -69.14 5.08 -64.06 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259828907.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.852 kcal (2) G-P(sol) polarization free energy of solvation -69.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds