Wall clock time and date at job start Mon Mar 30 2020 02:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30443 * 1 3 3 Si 1.86796 * 119.99806 * 2 1 4 4 H 1.48500 * 109.47334 * 274.98799 * 3 2 1 5 5 H 1.48503 * 109.47039 * 34.98668 * 3 2 1 6 6 H 1.48506 * 109.47119 * 154.98456 * 3 2 1 7 7 C 1.40678 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99636 * 186.02762 * 7 2 1 9 9 C 1.39398 * 120.00211 * 6.02383 * 7 2 1 10 10 C 1.39871 * 125.80827 * 174.47382 * 9 7 2 11 11 C 1.39316 * 106.86376 * 180.14136 * 10 9 7 12 12 O 1.35671 * 126.56323 * 179.90481 * 11 10 9 13 13 C 1.39652 * 106.87928 * 359.64019 * 11 10 9 14 14 C 1.40818 * 125.79221 * 180.25907 * 13 11 10 15 15 O 1.21535 * 119.99843 * 0.02562 * 14 13 11 16 16 O 1.34899 * 125.80969 * 354.21281 * 9 7 2 17 17 H 0.96998 * 120.00352 * 359.97438 * 1 2 3 18 18 H 1.07998 * 126.56476 * 0.02562 * 10 9 7 19 19 H 0.96696 * 114.00311 * 269.68982 * 12 11 10 20 20 H 1.07999 * 120.00466 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3044 0.0000 0.0000 3 14 2.2384 1.6177 0.0000 4 1 2.3804 2.1073 -1.3947 5 1 1.4924 2.6199 0.8028 6 1 3.5847 1.4121 0.5921 7 6 2.0078 -1.2183 -0.0005 8 1 3.0833 -1.2209 0.0977 9 6 1.3166 -2.4222 -0.1278 10 6 1.8958 -3.6892 -0.2521 11 6 0.8497 -4.6034 -0.3558 12 8 0.9625 -5.9483 -0.4944 13 6 -0.3373 -3.8713 -0.2837 14 6 -1.6390 -4.4050 -0.3429 15 8 -1.7994 -5.6034 -0.4668 16 8 -0.0248 -2.5639 -0.1470 17 1 -0.4850 0.8400 0.0004 18 1 2.9518 -3.9153 -0.2669 19 1 0.9978 -6.2475 -1.4133 20 1 -2.4950 -3.7497 -0.2773 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259963657.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:28 Heat of formation + Delta-G solvation = -87.592641 kcal Electronic energy + Delta-G solvation = -10497.315902 eV Core-core repulsion = 8239.632451 eV Total energy + Delta-G solvation = -2257.683451 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.041 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.55344 -37.42736 -36.32307 -34.11810 -30.67128 -29.17173 -26.39823 -22.42215 -20.28796 -19.53701 -18.29177 -15.99996 -15.83264 -15.42521 -14.60456 -13.98342 -13.69540 -13.08965 -12.72013 -12.49695 -11.95840 -11.62055 -11.45834 -11.08676 -10.63961 -9.82690 -9.72730 -8.58103 -8.32861 -7.50663 -7.29404 -4.94492 2.04122 2.74234 2.82371 2.88364 3.52986 3.56867 4.19523 4.65230 4.81395 5.23672 5.69022 6.55344 6.59703 6.73471 6.83779 7.22154 7.40223 7.62986 7.99664 8.18801 8.53473 8.64305 9.02186 9.66358 Molecular weight = 182.04amu Principal moments of inertia in cm(-1) A = 0.080141 B = 0.012258 C = 0.010693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.299796 B = 2283.677220 C = 2617.968220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.063 3.937 3 Si 0.932 3.068 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.414 4.414 8 H 0.114 0.886 9 C 0.240 3.760 10 C -0.398 4.398 11 C 0.156 3.844 12 O -0.477 6.477 13 C -0.302 4.302 14 C 0.405 3.595 15 O -0.523 6.523 16 O -0.148 6.148 17 H 0.295 0.705 18 H 0.128 0.872 19 H 0.381 0.619 20 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 3.223 -1.527 4.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.164 4.164 3 Si 0.755 3.245 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.441 4.441 8 H 0.132 0.868 9 C 0.185 3.815 10 C -0.418 4.418 11 C 0.109 3.891 12 O -0.285 6.285 13 C -0.350 4.350 14 C 0.278 3.722 15 O -0.409 6.409 16 O -0.046 6.046 17 H 0.106 0.894 18 H 0.146 0.854 19 H 0.236 0.764 20 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.796 2.928 -0.943 3.561 hybrid contribution 0.523 0.714 -0.500 1.017 sum 2.318 3.642 -1.443 4.552 Atomic orbital electron populations 1.69608 1.08045 1.31151 1.27563 1.26408 0.95159 1.02689 0.92115 0.85872 0.80371 0.78582 0.79720 1.18717 1.19461 1.17796 1.19177 0.95740 0.87562 1.41598 0.86775 1.19541 0.80052 0.93478 0.88463 1.21672 0.98258 0.92287 1.29585 1.19052 0.91995 0.82127 0.95901 1.84583 1.95600 1.17733 1.30594 1.21561 0.96363 0.83571 1.33488 1.20464 0.89150 0.89249 0.73367 1.90503 1.88385 1.18101 1.43898 1.84612 1.22599 1.22597 1.74819 0.89356 0.85377 0.76422 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -17.75 12.00 55.59 0.67 -17.08 14 2 C 0.06 1.41 5.50 -17.22 -0.09 1.32 14 3 Si 0.93 16.24 29.57 -169.99 -5.03 11.22 14 4 H -0.26 -4.51 7.11 56.52 0.40 -4.11 14 5 H -0.27 -4.60 7.11 56.52 0.40 -4.20 14 6 H -0.25 -4.32 7.11 56.52 0.40 -3.92 14 7 C -0.41 -10.02 9.31 -38.23 -0.36 -10.37 14 8 H 0.11 2.50 7.86 -52.49 -0.41 2.09 14 9 C 0.24 6.33 6.76 -38.54 -0.26 6.07 14 10 C -0.40 -10.00 10.90 -38.57 -0.42 -10.42 14 11 C 0.16 3.97 7.27 -38.65 -0.28 3.69 14 12 O -0.48 -10.90 12.83 -31.47 -0.40 -11.31 14 13 C -0.30 -7.91 7.05 -38.08 -0.27 -8.18 14 14 C 0.40 9.71 11.50 31.71 0.36 10.07 14 15 O -0.52 -13.39 16.96 -7.42 -0.13 -13.51 14 16 O -0.15 -4.05 8.98 1.77 0.02 -4.03 14 17 H 0.29 6.21 8.29 -40.82 -0.34 5.87 14 18 H 0.13 2.93 8.06 -52.49 -0.42 2.51 14 19 H 0.38 6.74 9.06 45.56 0.41 7.15 14 20 H 0.07 1.50 8.06 -52.49 -0.42 1.07 14 LS Contribution 201.27 15.07 3.03 3.03 Total: -1.00 -29.89 201.27 -3.14 -33.03 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 0.02 Total: 6.47 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -1.32 Total: -7.82 kcal Atomic # 7 Polarization: -17.75 SS G_CDS: 0.67 Total: -17.08 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.51 Total: -28.85 kcal Atomic # 14 Polarization: 16.24 SS G_CDS: -5.03 Total: 11.22 kcal Total LS contribution 3.03 Total: 3.03 kcal Total: -29.89 -3.14 -33.03 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963657.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.563 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds