Wall clock time and date at job start Mon Mar 30 2020 02:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30443 * 1 3 3 Si 1.86796 * 119.99806 * 2 1 4 4 H 1.48500 * 109.47334 * 274.98799 * 3 2 1 5 5 H 1.48503 * 109.47039 * 34.98668 * 3 2 1 6 6 H 1.48506 * 109.47119 * 154.98456 * 3 2 1 7 7 C 1.40678 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99636 * 186.02762 * 7 2 1 9 9 C 1.39398 * 120.00211 * 6.02383 * 7 2 1 10 10 C 1.39871 * 125.80827 * 174.47382 * 9 7 2 11 11 C 1.39316 * 106.86376 * 180.14136 * 10 9 7 12 12 O 1.35671 * 126.56323 * 179.90481 * 11 10 9 13 13 C 1.39652 * 106.87928 * 359.64019 * 11 10 9 14 14 C 1.40818 * 125.79221 * 180.25907 * 13 11 10 15 15 O 1.21535 * 119.99843 * 0.02562 * 14 13 11 16 16 O 1.34899 * 125.80969 * 354.21281 * 9 7 2 17 17 H 0.96998 * 120.00352 * 359.97438 * 1 2 3 18 18 H 1.07998 * 126.56476 * 0.02562 * 10 9 7 19 19 H 0.96696 * 114.00311 * 269.68982 * 12 11 10 20 20 H 1.07999 * 120.00466 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3044 0.0000 0.0000 3 14 2.2384 1.6177 0.0000 4 1 2.3804 2.1073 -1.3947 5 1 1.4924 2.6199 0.8028 6 1 3.5847 1.4121 0.5921 7 6 2.0078 -1.2183 -0.0005 8 1 3.0833 -1.2209 0.0977 9 6 1.3166 -2.4222 -0.1278 10 6 1.8958 -3.6892 -0.2521 11 6 0.8497 -4.6034 -0.3558 12 8 0.9625 -5.9483 -0.4944 13 6 -0.3373 -3.8713 -0.2837 14 6 -1.6390 -4.4050 -0.3429 15 8 -1.7994 -5.6034 -0.4668 16 8 -0.0248 -2.5639 -0.1470 17 1 -0.4850 0.8400 0.0004 18 1 2.9518 -3.9153 -0.2669 19 1 0.9978 -6.2475 -1.4133 20 1 -2.4950 -3.7497 -0.2773 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259963657.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:28 Heat of formation + Delta-G solvation = -109.017042 kcal Electronic energy + Delta-G solvation = -10498.244934 eV Core-core repulsion = 8239.632451 eV Total energy + Delta-G solvation = -2258.612483 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.47514 -39.33888 -38.17593 -35.91920 -32.59529 -31.07474 -28.27985 -24.29516 -22.20130 -21.44195 -20.15642 -17.86925 -17.69917 -17.12550 -16.50298 -15.83784 -15.52603 -14.77162 -14.56852 -14.43867 -13.73529 -13.30561 -13.03316 -12.89882 -12.04226 -11.58297 -11.44557 -10.47165 -10.27667 -9.44781 -9.02131 -6.85348 0.14699 1.25859 1.39979 1.60054 1.84595 2.11229 2.30212 2.77467 2.96767 3.41086 3.89949 4.70955 4.81936 4.84128 4.94153 5.33295 5.58071 5.80125 6.17698 6.30009 6.66594 6.87982 7.11169 7.96980 Molecular weight = 182.04amu Principal moments of inertia in cm(-1) A = 0.080141 B = 0.012258 C = 0.010693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.299796 B = 2283.677220 C = 2617.968220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.020 3.980 3 Si 1.016 2.984 4 H -0.256 1.256 5 H -0.262 1.262 6 H -0.244 1.244 7 C -0.422 4.422 8 H 0.134 0.866 9 C 0.206 3.794 10 C -0.410 4.410 11 C 0.152 3.848 12 O -0.481 6.481 13 C -0.338 4.338 14 C 0.407 3.593 15 O -0.544 6.544 16 O -0.169 6.169 17 H 0.308 0.692 18 H 0.145 0.855 19 H 0.403 0.597 20 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 4.799 -1.558 6.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.203 4.203 3 Si 0.832 3.168 4 H -0.180 1.180 5 H -0.186 1.186 6 H -0.167 1.167 7 C -0.448 4.448 8 H 0.152 0.848 9 C 0.152 3.848 10 C -0.430 4.430 11 C 0.105 3.895 12 O -0.293 6.293 13 C -0.385 4.385 14 C 0.282 3.718 15 O -0.432 6.432 16 O -0.069 6.069 17 H 0.120 0.880 18 H 0.163 0.837 19 H 0.261 0.739 20 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.736 4.470 -0.988 5.333 hybrid contribution 0.255 0.262 -0.493 0.614 sum 2.991 4.732 -1.481 5.791 Atomic orbital electron populations 1.69659 1.09979 1.33199 1.26802 1.27548 0.95873 1.06202 0.90722 0.84667 0.79053 0.72984 0.80055 1.17985 1.18634 1.16656 1.19808 0.96918 0.87865 1.40215 0.84795 1.20151 0.80160 0.94837 0.89681 1.21916 0.99066 0.92064 1.29939 1.19241 0.92070 0.82902 0.95302 1.84509 1.95505 1.16537 1.32726 1.22010 0.97579 0.83583 1.35334 1.20804 0.89424 0.89195 0.72403 1.90478 1.88578 1.19009 1.45174 1.84566 1.23197 1.23197 1.75927 0.88027 0.83693 0.73864 0.87735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -36.41 12.00 21.95 0.26 -36.15 14 2 C 0.02 0.87 5.50 85.50 0.47 1.34 14 3 Si 1.02 31.05 29.57 68.60 2.03 33.07 14 4 H -0.26 -7.53 7.11 99.48 0.71 -6.83 14 5 H -0.26 -7.66 7.11 99.48 0.71 -6.95 14 6 H -0.24 -7.00 7.11 99.48 0.71 -6.29 14 7 C -0.42 -20.01 9.31 23.15 0.22 -19.80 14 8 H 0.13 5.61 7.86 -2.91 -0.02 5.59 14 9 C 0.21 10.93 6.76 22.94 0.16 11.08 14 10 C -0.41 -20.59 10.90 22.93 0.25 -20.34 14 11 C 0.15 7.76 7.27 22.87 0.17 7.92 14 12 O -0.48 -21.80 12.83 -77.69 -1.00 -22.79 14 13 C -0.34 -17.88 7.05 23.24 0.16 -17.71 14 14 C 0.41 19.51 11.50 68.45 0.79 20.30 14 15 O -0.54 -27.81 16.96 8.37 0.14 -27.67 14 16 O -0.17 -9.38 8.98 -16.57 -0.15 -9.53 14 17 H 0.31 12.59 8.29 -92.71 -0.77 11.82 14 18 H 0.15 6.53 8.06 -2.91 -0.02 6.51 14 19 H 0.40 13.96 9.06 -74.06 -0.67 13.29 14 20 H 0.11 4.29 8.06 -2.91 -0.02 4.27 14 Total: -1.00 -62.98 201.27 4.11 -58.87 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.61 Total: 21.42 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: 2.21 Total: -17.22 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.26 Total: -36.15 kcal Atomic # 8 Polarization: -58.99 SS G_CDS: -1.00 Total: -59.99 kcal Atomic # 14 Polarization: 31.05 SS G_CDS: 2.03 Total: 33.07 kcal Total: -62.98 4.11 -58.87 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963657.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.147 kcal (2) G-P(sol) polarization free energy of solvation -62.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds