Wall clock time and date at job start Mon Mar 30 2020 01:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35033 * 1 3 3 C 1.40075 * 119.99714 * 2 1 4 4 H 1.08007 * 119.99439 * 153.18391 * 3 2 1 5 5 C 1.40306 * 120.00507 * 333.18289 * 3 2 1 6 6 N 1.30685 * 120.00423 * 162.04347 * 5 3 2 7 7 Si 1.86805 * 119.99705 * 342.03843 * 5 3 2 8 8 H 1.48504 * 109.46647 * 89.57956 * 7 5 3 9 9 H 1.48493 * 109.47159 * 209.57504 * 7 5 3 10 10 H 1.48500 * 109.47226 * 329.57858 * 7 5 3 11 11 C 1.50699 * 119.99790 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47289 * 94.99910 * 11 2 1 13 13 H 1.08997 * 110.37234 * 52.64134 * 12 11 2 14 14 C 1.54376 * 110.41032 * 175.00056 * 12 11 2 15 15 C 1.54265 * 105.06457 * 142.62749 * 14 12 11 16 16 C 1.54382 * 105.14691 * 359.94630 * 15 14 12 17 17 N 1.48569 * 110.40672 * 290.16959 * 12 11 2 18 18 H 1.08001 * 119.99953 * 354.14708 * 1 2 3 19 19 H 1.07995 * 120.00103 * 174.15633 * 1 2 3 20 20 H 0.96997 * 120.00656 * 179.97438 * 6 5 3 21 21 H 1.08996 * 109.46979 * 334.99214 * 11 2 1 22 22 H 1.09002 * 109.46711 * 214.99403 * 11 2 1 23 23 H 1.09000 * 110.32603 * 23.72852 * 14 12 11 24 24 H 1.09003 * 110.40970 * 261.56551 * 14 12 11 25 25 H 1.08998 * 110.32236 * 118.89055 * 15 14 12 26 26 H 1.08997 * 110.32712 * 241.00303 * 15 14 12 27 27 H 1.09004 * 110.41088 * 94.97228 * 16 15 14 28 28 H 1.08998 * 110.41432 * 217.41922 * 16 15 14 29 29 H 1.00903 * 110.99914 * 321.29332 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0506 1.2131 0.0000 4 1 3.0436 1.2634 0.4220 5 6 1.4623 2.3629 -0.5481 6 7 1.9342 3.5443 -0.2492 7 14 0.0045 2.2049 -1.7055 8 1 -1.2556 2.2257 -0.9199 9 1 0.0087 3.3386 -2.6645 10 1 0.1015 0.9248 -2.4519 11 6 2.1038 -1.3051 -0.0006 12 6 2.4676 -1.6833 -1.4377 13 1 2.9819 -0.8573 -1.9289 14 6 3.3476 -2.9516 -1.4543 15 6 2.8835 -3.7455 -2.6929 16 6 1.7608 -2.8923 -3.3215 17 7 1.2489 -2.0633 -2.1978 18 1 -0.5400 0.9304 0.0954 19 1 -0.5400 -0.9304 -0.0952 20 1 1.5278 4.3392 -0.6284 21 1 1.4789 -2.0856 0.4335 22 1 3.0145 -1.1991 0.5888 23 1 3.1869 -3.5358 -0.5482 24 1 4.3998 -2.6831 -1.5492 25 1 3.7073 -3.8649 -3.3965 26 1 2.4966 -4.7200 -2.3949 27 1 2.1630 -2.2562 -4.1100 28 1 0.9711 -3.5328 -3.7141 29 1 0.6130 -2.5926 -1.6202 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260053495.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:40 Heat of formation + Delta-G solvation = -17.927747 kcal Electronic energy + Delta-G solvation = -11046.084201 eV Core-core repulsion = 9160.806497 eV Total energy + Delta-G solvation = -1885.277704 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.75025 -36.75609 -34.18894 -30.83069 -30.67372 -26.90654 -26.20462 -22.37607 -21.26924 -20.94216 -17.85405 -17.17526 -16.48682 -16.20317 -15.36456 -14.99634 -14.71402 -14.46475 -13.72099 -13.19230 -13.11270 -12.53467 -12.41270 -12.25297 -11.90360 -11.86266 -11.61772 -11.33719 -11.30599 -10.87296 -9.44120 -9.39211 -8.76682 -6.43377 1.30499 1.39980 1.56085 1.85493 2.31725 3.17217 3.41846 3.95321 3.99764 4.15706 4.41395 4.53353 4.62127 4.67856 4.80687 5.02539 5.07310 5.09582 5.15112 5.23186 5.34098 5.43009 5.47082 5.81655 5.99915 6.08051 6.60378 6.68819 6.91555 7.16897 8.30861 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.053947 B = 0.013507 C = 0.012520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.900687 B = 2072.502361 C = 2235.829899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.416 4.416 2 C 0.045 3.955 3 C -0.488 4.488 4 H 0.047 0.953 5 C 0.046 3.954 6 N -0.869 5.869 7 Si 0.980 3.020 8 H -0.285 1.285 9 H -0.302 1.302 10 H -0.237 1.237 11 C -0.070 4.070 12 C 0.086 3.914 13 H 0.058 0.942 14 C -0.148 4.148 15 C -0.146 4.146 16 C 0.035 3.965 17 N -0.678 5.678 18 H 0.053 0.947 19 H 0.081 0.919 20 H 0.286 0.714 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.655 -13.040 -5.503 14.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 C 0.044 3.956 3 C -0.519 4.519 4 H 0.065 0.935 5 C -0.166 4.166 6 N -0.497 5.497 7 Si 0.807 3.193 8 H -0.212 1.212 9 H -0.231 1.231 10 H -0.160 1.160 11 C -0.108 4.108 12 C -0.024 4.024 13 H 0.077 0.923 14 C -0.187 4.187 15 C -0.185 4.185 16 C -0.094 4.094 17 N -0.306 5.306 18 H 0.072 0.928 19 H 0.099 0.901 20 H 0.096 0.904 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.600 -12.143 -5.874 13.503 hybrid contribution -0.135 -0.095 0.280 0.325 sum 0.465 -12.239 -5.594 13.464 Atomic orbital electron populations 1.23159 0.94697 0.97914 1.29882 1.18792 0.93252 0.92980 0.90620 1.19336 1.02286 0.93649 1.36616 0.93457 1.26904 0.98934 0.94030 0.96766 1.69697 1.41403 0.99649 1.38964 0.85198 0.77669 0.78171 0.78226 1.21217 1.23124 1.16017 1.20701 0.99195 0.95089 0.95830 1.22379 0.90475 0.96696 0.92890 0.92332 1.22958 1.00296 0.96229 0.99253 1.22844 0.99498 0.99179 0.96967 1.23121 0.97044 0.94565 0.94704 1.63318 1.13653 1.41882 1.11775 0.92840 0.90091 0.90437 0.91320 0.91959 0.90731 0.91026 0.90263 0.90306 0.91531 0.89401 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.42 -21.13 11.38 67.08 0.76 -20.37 15 2 C 0.05 2.32 4.46 -20.16 -0.09 2.23 15 3 C -0.49 -28.59 9.57 23.22 0.22 -28.37 15 4 H 0.05 2.93 8.06 -2.91 -0.02 2.91 15 5 C 0.05 2.67 5.39 85.37 0.46 3.13 15 6 N -0.87 -51.88 13.92 21.89 0.30 -51.58 15 7 Si 0.98 49.40 24.53 68.60 1.68 51.08 15 8 H -0.28 -14.36 6.50 99.48 0.65 -13.71 15 9 H -0.30 -14.51 7.11 99.48 0.71 -13.81 15 10 H -0.24 -11.99 7.00 99.48 0.70 -11.30 15 11 C -0.07 -2.84 4.77 29.85 0.14 -2.69 15 12 C 0.09 3.08 3.18 45.06 0.14 3.22 15 13 H 0.06 2.47 8.14 -2.39 -0.02 2.46 15 14 C -0.15 -3.93 6.55 31.49 0.21 -3.72 15 15 C -0.15 -3.18 6.99 31.49 0.22 -2.96 15 16 C 0.04 0.92 7.48 86.42 0.65 1.56 15 17 N -0.68 -23.20 7.29 -478.57 -3.49 -26.69 15 18 H 0.05 2.92 4.49 -2.91 -0.01 2.91 15 19 H 0.08 3.71 8.06 -2.91 -0.02 3.68 15 20 H 0.29 15.61 8.29 -92.71 -0.77 14.85 15 21 H 0.07 2.46 7.90 -2.39 -0.02 2.44 15 22 H 0.06 2.46 8.12 -2.39 -0.02 2.44 15 23 H 0.07 1.82 7.86 -2.39 -0.02 1.80 15 24 H 0.07 1.82 8.14 -2.39 -0.02 1.80 15 25 H 0.08 1.52 8.14 -2.39 -0.02 1.50 15 26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 15 27 H 0.07 1.82 8.14 -2.38 -0.02 1.80 15 28 H 0.09 1.89 8.14 -2.39 -0.02 1.87 15 29 H 0.34 10.70 8.54 -89.69 -0.77 9.94 15 Total: -1.00 -63.63 236.30 1.49 -62.14 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.28 Total: 13.02 kcal Atomic # 6 Polarization: -50.69 SS G_CDS: 2.71 Total: -47.97 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -3.19 Total: -78.27 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 1.68 Total: 51.08 kcal Total: -63.63 1.49 -62.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260053495.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.211 kcal (2) G-P(sol) polarization free energy of solvation -63.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds